Factsheet for VIT_18s0001g08100.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0205g00030.t01	Wine grape	nucleus	56.67	65.4
Solyc04g076860.2.1	Tomato	nucleus	62.62	63.2
PGSC0003DMT400016355	Potato	nucleus	61.43	61.67
AT5G49665.1	Thale cress	plastid	58.12	59.46
VIT_15s0024g01790.t01	Wine grape	nucleus	22.46	59.23
KRH16916	Soybean	nucleus	52.58	59.05
KRH72527	Soybean	nucleus	50.73	58.99
VIT_19s0135g00160.t01	Wine grape	nucleus	22.32	58.88
CDY28148	Canola	plastid	52.44	58.47
Bra040498.1-P	Field mustard	plastid	54.29	56.46
CDY45010	Canola	mitochondrion, peroxisome	53.9	56.04
Os04t0101800-01	Rice	cytosol, mitochondrion, peroxisome, plastid	43.73	48.04
GSMUA_Achr7P01890_001	Banana	mitochondrion	44.65	47.34
GSMUA_Achr5P14740_001	Banana	mitochondrion	43.06	47.11
Zm00001d024940_P001	Maize	peroxisome	45.71	46.95
GSMUA_Achr4P20870_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	44.65	46.17
Zm00001d004553_P001	Maize	peroxisome	45.71	46.13
GSMUA_Achr4P22090_001	Banana	nucleus	43.46	46.01
TraesCS2A01G045100.1	Wheat	peroxisome	45.05	44.87
TraesCS2D01G043700.1	Wheat	peroxisome	45.05	44.69
TraesCS2B01G057300.1	Wheat	peroxisome	45.18	44.42
OQU81040	Sorghum	peroxisome	40.42	42.8
VIT_13s0019g04440.t01	Wine grape	endoplasmic reticulum	28.4	30.28
VIT_06s0004g02630.t01	Wine grape	mitochondrion, nucleus	28.8	29.9
VIT_00s0125g00180.t01	Wine grape	plasma membrane	26.55	28.88
VIT_00s0475g00020.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	16.91	24.71

Protein Annotations

EntrezGene:100253915	wikigene:100253915	MapMan:26.3.1.6	Gene3D:3.30.40.10	Gene3D:3.40.50.410	EMBL:AM477181
ProteinID:CAN77438	ProteinID:CAN77438.1	ProteinID:CCB45693	ProteinID:CCB45693.1	UniProt:F6GZL4	EMBL:FN595227
InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	EntrezGene:LOC100253915	wikigene:LOC100253915
PFAM:PF13519	PFAM:PF17123	PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF55
SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	TIGR:TC55666	UniParc:UPI000210952D
ArrayExpress:VIT_18s0001g08100	EnsemblPlantsGene:VIT_18s0001g08100	EnsemblPlants:VIT_18s0001g08100.t01	InterPro:VWF_A	RefSeq:XP_002285586	RefSeq:XP_002285586.2
RefSeq:XP_010664450.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:

Description

No Description!

Coordinates

chr18:+:6547030..6549993

Molecular Weight (calculated)

83743.6 Da

IEP (calculated)

9.467

GRAVY (calculated)

-0.512

Length

757 amino acids

Sequence
(BLAST)

001: MGTGWRRAFC TTIHRDSQAT HGDKQRHTTP SPSPSPRSGT KLGLFSSGSN TSTPRLQSQP VSSPSLRCRT TVAAAQTPSI DESPKLQAKT TTPTGTAKTP
101: RSLLGSNPSS PRSPLKLSIF RNSFKLRNSC GICLQSVKTG QGTAIYTAEC SHAFHFSCIA AHVRKQGSLV CPVCNTTWKD EPLLMIHKNR KPEEDEVIAD
201: RYVIKSQNEN DKRKKESLIR DVKTKLEQQQ QIKAADFRTY DDDEPLLSPT SGGRFIPIPE ADENGGDDEE EIEEFQGFFV NPNPSCSVNS CDETVINNSG
301: DSRRNVEVRM LQEAAVVSVG RSHETYAVAL RIKAPPPPHH YARTAPFLDP ARRAPIDLVT VLDVSASMTG SKLQMLKRAM RLVISSLGPS DRLAIVAFSA
401: SPRRLLPLRR MTAHGQRSAR RIIDRLVCSQ GSSVGEALRK ATKVLEDRRE RNPVASIMLL SDGQDDRVHS KAPNQRHVPA HVSSTRFSHI EIPVHSFGFG
501: ESGGYSQEPA EDAFAKCVGG LLSVVVQDLR IQLSFVGGST RAEITGVYLC NGRPTALNAG SIRLGDLYAE EERELLVELR APASAVGTHH VMSVRCCYKD
601: SATKEMVYGN EQALLVPQPH TIRSGPKIER LRNLFITTRA IAETRRLVEH GDMSSGHHLL SSARALLMQF NSISAEEYIR GLETEMAELH WRRQQQLDQQ
701: HRRRSSETRE VTLVDENGEP LTPTSAWRAA EKLAKVAMMR KSMNKVSDLH GFENARF

Best Arabidopsis Sequence Match ( AT5G49665.1 )
(BLAST)

001: MGTGWRRAFC TTAPRNSDAA APDLDKQRTG YNLTPSPSPR SCVKLAFLSG GSNPSTPRST SSPSLRCRTA DAQTPTAEQT STPRSATKSP RLSLAAISNP
101: SSPRSPLKLS LFRNSFKFRS TCGICLNSVK TGQGTAKYTA ECSHAFHFPC IADYVRKQGK LVCPVCNSIW KDASLLVPHK NATESPLDDS VSVIQEKRVV
201: VTSSPRAKPR PKQSDYSRFY DDDEPLLSPR FVTIPEADEN CGGEEEDDVP QFKGFVVDPN PSFAVKTNEI PVNGRDFGNV QVSLLPEAAV VSVGCGYETR
301: AVALRVKAPP PLTARGGVGR RLLDPSQRAP VDLVVVVDVG GTMNGAKLQM VKRAMRLVIS SLGSADRLSI VAVVMTVPKR LLPLKRMTEH GKRSAGAVVD
401: GLLCGQGSNT SEALKKASRV LEDRRERNPV ASIVLLTDGQ GQLSKVHTNQ RSTITNVGST RFAHIEIPVT EHGFGESGGC SNAPAEEAFA KCIGGLLSVV
501: VQDLRIQIRV GSGSGPCEIS AIYLCNGRPT LVSSGSGSVR LGDLYAGEER ELLVELRVPS TATRAYQILS VRGLFKDPST QEVVYGRDQS LRVPQAVRSS
601: SSPRIERLRS LFIATRAVAE SRRLVEYGEC TSAYHLLTSA RALLGQSGTV EAAEYIKVVE AELVEVQWRG QQLMEYQSQH QQQHNQRRRG SERETTTTMT
701: LMDENGEPLT PASAWRAAEK LAKLAMMKKS DLHGFENARF

Arabidopsis Description

WAV3E3 ubiquitin-protein ligase WAV3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTA6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.