CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 1
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16916	Soybean	nucleus	88.79	85.76
VIT_18s0001g08100.t01	Wine grape	plastid	58.99	50.73
Solyc04g076860.2.1	Tomato	nucleus	57.45	49.87
PGSC0003DMT400016355	Potato	nucleus	56.53	48.81
CDY28148	Canola	plastid	50.23	48.16
KRH45468	Soybean	cytosol, peroxisome	29.65	47.89
AT5G49665.1	Thale cress	plastid	53.0	46.62
Bra040498.1-P	Field mustard	plastid	51.31	45.88
CDY45010	Canola	mitochondrion, peroxisome	51.0	45.6
KRH39527	Soybean	extracellular, golgi	35.94	43.25
KRH74431	Soybean	mitochondrion	44.85	42.94
KRH75634	Soybean	nucleus	40.25	40.43
Os04t0101800-01	Rice	cytosol, mitochondrion, peroxisome, plastid	41.01	38.75
GSMUA_Achr7P01890_001	Banana	mitochondrion	40.86	37.25
GSMUA_Achr5P14740_001	Banana	mitochondrion	39.48	37.14
Zm00001d024940_P001	Maize	peroxisome	41.94	37.04
GSMUA_Achr4P22090_001	Banana	nucleus	39.94	36.36
GSMUA_Achr4P20870_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	40.86	36.34
Zm00001d004553_P001	Maize	peroxisome	41.63	36.13
TraesCS2A01G045100.1	Wheat	peroxisome	41.17	35.26
TraesCS2D01G043700.1	Wheat	peroxisome	41.32	35.26
TraesCS2B01G057300.1	Wheat	peroxisome	41.32	34.94
OQU81040	Sorghum	peroxisome	35.64	32.45
KRH45469	Soybean	nucleus	7.99	29.38
KRH11654	Soybean	nucleus, plastid	17.82	20.98
KRH36665	Soybean	nucleus	17.51	20.73
KRH51230	Soybean	nucleus	16.13	20.27

Protein Annotations

EntrezGene:100819417	MapMan:26.3.1.6	Gene3D:3.30.40.10	Gene3D:3.40.50.410	EMBL:ACUP02001219	ncoils:Coil
EnsemblPlantsGene:GLYMA_02G218200	UniProt:I1JH43	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465
EnsemblPlants:KRH72527	ProteinID:KRH72527	ProteinID:KRH72527.1	PFAM:PF13519	PFAM:PF17123	PFscan:PS50089
PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF55	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300
SUPFAM:SSF57850	UniParc:UPI0002337752	InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:40564224..40566636

Molecular Weight (calculated)

71872.5 Da

IEP (calculated)

8.885

GRAVY (calculated)

-0.378

Length

651 amino acids

Sequence
(BLAST)

001: MGSGWRRAFC TSDPDNSTIR TKHRTQSPTP SPRSCVSLGF LSSTITELSS NSSPKFQTKT NTSNSNSPLS PKLNLSLFRN SFKFRNNCGI CSNSVKTGQG
101: TAIYTAECGH AFHFPCVVSV SHARTNVCPV CDATWNDVPL LQNNAEKQNQ PIHHHRSDSV SSYDDDEPLP SPLTCSAQIA PIPEDEENDD VSEFPGFFVD
201: PKPQSSLRQN DGGDSRSVRV KLMPECAVIS VSQSHETRAL VLRVKAPPVL SPPRWRRPPM DLVTVLDVGN SMSGAKLHML KRAMRLVISS LGAADRLAVV
301: ASAADSKRLL PLRRMTAQGQ RAARRVVDRL VCGHGNSVGE EAMNIAAKVL EDRRERNTLA KILLLSDGHD NANNKNQRRF LSHVSSSIRF DCIKVPVLSY
401: GFETKRTGLM HEPLEDDFAL YVDRTLSVAV HDLRIQLGFS APAEIRAVYS CSGGPTALST SAARLGDLYA EEEKELLVEV RVPTSALGTH HVMTLRCVNI
501: NKDPVSQEFV YGAEHVFTVV PPPKSIPICG GRVERLRNVF ITSRAVAESR RLAKHNDFSS AHHLLSSARA LLAQLGSAEE YVRGLEAELV ELQWQKQQQR
601: VEREARWVDE SGEVLTPTSA WRAAEKLAKM ARMKKSLNKV SDLHGFENAR F

Best Arabidopsis Sequence Match ( AT5G49665.1 )
(BLAST)

001: MGTGWRRAFC TTAPRNSDAA APDLDKQRTG YNLTPSPSPR SCVKLAFLSG GSNPSTPRST SSPSLRCRTA DAQTPTAEQT STPRSATKSP RLSLAAISNP
101: SSPRSPLKLS LFRNSFKFRS TCGICLNSVK TGQGTAKYTA ECSHAFHFPC IADYVRKQGK LVCPVCNSIW KDASLLVPHK NATESPLDDS VSVIQEKRVV
201: VTSSPRAKPR PKQSDYSRFY DDDEPLLSPR FVTIPEADEN CGGEEEDDVP QFKGFVVDPN PSFAVKTNEI PVNGRDFGNV QVSLLPEAAV VSVGCGYETR
301: AVALRVKAPP PLTARGGVGR RLLDPSQRAP VDLVVVVDVG GTMNGAKLQM VKRAMRLVIS SLGSADRLSI VAVVMTVPKR LLPLKRMTEH GKRSAGAVVD
401: GLLCGQGSNT SEALKKASRV LEDRRERNPV ASIVLLTDGQ GQLSKVHTNQ RSTITNVGST RFAHIEIPVT EHGFGESGGC SNAPAEEAFA KCIGGLLSVV
501: VQDLRIQIRV GSGSGPCEIS AIYLCNGRPT LVSSGSGSVR LGDLYAGEER ELLVELRVPS TATRAYQILS VRGLFKDPST QEVVYGRDQS LRVPQAVRSS
601: SSPRIERLRS LFIATRAVAE SRRLVEYGEC TSAYHLLTSA RALLGQSGTV EAAEYIKVVE AELVEVQWRG QQLMEYQSQH QQQHNQRRRG SERETTTTMT
701: LMDENGEPLT PASAWRAAEK LAKLAMMKKS DLHGFENARF

Arabidopsis Description

WAV3E3 ubiquitin-protein ligase WAV3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTA6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.