CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11654	Soybean	nucleus, plastid	76.25	71.43
KRH36665	Soybean	nucleus	75.68	71.27
VIT_00s0475g00020.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	58.49	58.49
Solyc04g015280.2.1	Tomato	cytosol, nucleus, plastid	55.6	54.14
PGSC0003DMT400070011	Potato	nucleus	55.21	53.96
TraesCS5A01G178300.1	Wheat	mitochondrion	48.26	47.44
TraesCS5B01G176000.2	Wheat	mitochondrion	47.88	47.06
Os09t0298500-01	Rice	nucleus	47.49	46.24
GSMUA_Achr9P22360_001	Banana	plastid	35.71	45.68
Zm00001d020013_P001	Maize	cytosol	46.33	45.63
Bra024913.1-P	Field mustard	mitochondrion	44.98	44.64
TraesCS5D01G182800.1	Wheat	cytosol, plastid	48.26	44.01
CDY17702	Canola	mitochondrion	31.66	42.6
OQU89212	Sorghum	cytosol	45.17	41.86
CDX77800	Canola	nucleus	44.98	41.02
KRH45469	Soybean	nucleus	6.56	19.21
KRH39527	Soybean	extracellular, golgi	18.53	17.74
KRH16916	Soybean	nucleus	22.01	16.91
KRH75634	Soybean	nucleus	21.04	16.82
KRH74431	Soybean	mitochondrion	22.01	16.76
KRH72527	Soybean	nucleus	20.27	16.13
KRH45468	Soybean	cytosol, peroxisome	12.36	15.88

Protein Annotations

EntrezGene:100809026	Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	EMBL:ACUP02004730	EnsemblPlantsGene:GLYMA_07G270000
UniProt:I1KNN4	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	EnsemblPlants:KRH51230
ProteinID:KRH51230	ProteinID:KRH51230.1	PFAM:PF13519	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR10579
PANTHER:PTHR10579:SF47	SMART:SM00184	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI00023391D6	InterPro:VWF_A
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

hypothetical protein

Coordinates

chr7:+:44277019..44280107

Molecular Weight (calculated)

57970.2 Da

IEP (calculated)

9.037

GRAVY (calculated)

-0.439

Length

518 amino acids

Sequence
(BLAST)

001: MGETESGRRR RRNRSRGAWK LSCGWRNWKH VLHPLPIHTS NPNSSSVSPS TTINSSGEQT EKTDCCNITK INDNGIPNKN LCAICLDPLS HKSKGSKAIF
101: TAQCSHAFHF ACISSNVRHG NVTCPICRAQ WTQLPRNLNS GSTISTNRSD PILQILDDSI ATFRVHRRTL LRSTRYDDDD PVESDDAPEI HKLCFSLAPI
201: PPKAPTSHLS PHPLSCGSSS LLQSPPQPMH IMFPSSNRSY LSLKLAQERA TDLVLVASSN GQHLRLLKQA MALVVYSLRH TDRLAIVTHS SAAARVFPLR
301: RMSSYGKRTA LQVIERLFYM GQADPVEGLK KGIKILQDRT HKNSKSCILH LSDNPTRPYH AVNMELPSTP IHRFHVGFSF GTSNGFFIQE FERFLNKILG
401: GIVRDIQLRI CGTGEEVGGC RVVRIGDMRG GEERRVVLDL GDCTDVYVEY SYTEGDIDEC VRRTGETVVG IGDHKGRVTE VAEETMNIIG RSCSVESWDF
501: HDPYMARRWA KHLQGHRL

Best Arabidopsis Sequence Match ( AT1G08050.1 )
(BLAST)

001: MENPNNLRES KSHLNLNECL TLPKTLDPSS PSPSDASRSS VDPNRPDSSS SRPGSTPSSS GLRFSKGRCA ICLYEIRKED GKAIFTAECS HSFHFDCITS
101: NVKHGNRICP LCRTQWKQVP LCDVDSVPTF VAQRGFEDDE PLPQGDTQIH SDGHRSDHQA LEIKLFPEVS ALAKPVSRAD FAVLVHLKAE GVSDDARRAR
201: APLDLITVLD VSGSMDGVKM ELMKNAMSFV IQNLGETDRL SVISFSSMAR RLFPLRLMSE TGKQAAMQAV NSLVADGGTN IAEGLKIGAR VIEGRRWKNP
301: VSGMMLLSDG QDNFTFSHAG VRLRTDYESL LPSSCRIPIH TFGFGSDHDA ELMHTISEVS SGTFSFIETE TVIQDAFAQC IGGLLSVVIL EQVVEIECIH
401: EQGLKISSIK AGSYRSRIAP DARTATIDVG DMYAEEERDF LVLLEIPCCD NGSGESESLS LLKVRCVYKD PVTKEIVHVE SGELSIQRPM KLTGKEVVSI
501: EVDRQLNRFL VSQAMSEARV LADGGDLSGA VGILRNRERE LSETPSAQSS DRLCQSLSSE LSALQERMTS RRMYRTSGRA YAFSSMSSHS AQRATARGDS
601: TQGFSPVQAY QTSPMARMVT RSQLLVLESP TKPSPGRGEQ S

Arabidopsis Description

T6D22.13 [Source:UniProtKB/TrEMBL;Acc:Q9LN03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.