CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020013_P001	Maize	cytosol	81.93	87.07
Os09t0298500-01	Rice	nucleus	77.64	81.58
TraesCS5B01G176000.2	Wheat	mitochondrion	76.57	81.21
TraesCS5A01G178300.1	Wheat	mitochondrion	76.21	80.83
TraesCS5D01G182800.1	Wheat	cytosol, plastid	76.92	75.7
VIT_00s0475g00020.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	47.94	51.74
GSMUA_Achr9P22360_001	Banana	plastid	34.7	47.9
KRH36665	Soybean	nucleus	45.98	46.73
KRH11654	Soybean	nucleus, plastid	46.15	46.65
PGSC0003DMT400070011	Potato	nucleus	42.93	45.28
KRH51230	Soybean	nucleus	41.86	45.17
Solyc04g015280.2.1	Tomato	cytosol, nucleus, plastid	42.75	44.92
Bra024913.1-P	Field mustard	mitochondrion	39.71	42.53
CDY17702	Canola	mitochondrion	27.91	40.52
CDX77800	Canola	nucleus	39.89	39.26
EER91509	Sorghum	nucleus	19.5	18.66
OQU93256	Sorghum	mitochondrion	23.26	18.62
EER95529	Sorghum	nucleus	21.65	18.62
OQU81931	Sorghum	mitochondrion	21.82	17.5
OQU91675	Sorghum	cytosol	19.32	17.36
OQU93258	Sorghum	cytosol	21.47	17.09
EER91508	Sorghum	cytosol, plastid	19.5	16.85
OQU85324	Sorghum	mitochondrion	21.11	16.79
OQU85917	Sorghum	nucleus	21.47	16.28
EER91513	Sorghum	mitochondrion	20.39	16.19
EES11757	Sorghum	cytosol	14.49	15.61
OQU90497	Sorghum	cytosol	13.42	14.56
OQU79988	Sorghum	cytosol	13.42	13.86
OQU81040	Sorghum	peroxisome	16.64	13.01
EES10354	Sorghum	plastid	10.91	12.82
KXG25767	Sorghum	mitochondrion	10.55	12.61
KXG20893	Sorghum	cytosol, plastid	13.77	12.6
EER87790	Sorghum	endoplasmic reticulum, extracellular	13.6	11.95
EES05180	Sorghum	mitochondrion	6.62	10.03
KXG38506	Sorghum	cytosol	5.72	9.47
OQU75754	Sorghum	mitochondrion, plastid	9.66	8.72

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	EntrezGene:8064664	UniProt:A0A1W0W4C2	GO:GO:0003674
GO:GO:0005488	GO:GO:0008270	InterPro:IPR001841	InterPro:IPR013083	InterPro:IPR036465	EnsemblPlants:OQU89212
ProteinID:OQU89212	ProteinID:OQU89212.1	PFAM:PF12678	PFscan:PS50089	PANTHER:PTHR10579	PANTHER:PTHR10579:SF47
SMART:SM00184	EnsemblPlantsGene:SORBI_3002G160800	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0009DC88D3	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_H2	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

hypothetical protein

Coordinates

chr2:-:49669410..49675138

Molecular Weight (calculated)

62391.4 Da

IEP (calculated)

7.218

GRAVY (calculated)

-0.113

Length

559 amino acids

Sequence
(BLAST)

001: MCEFPYEPTY VLDIIDRKIA YGSTKILDRT TLPFFLSYFY IFLVKRIYCS LPSEQYLECS CIAVYKCILL HNSFCIDMQI SCSALNAAAD STDGEQQKME
101: EPTSTRVADK NLCAICLELL STSSSDIENG ETPAIFTAQC SHSFHFLCIA SNIRHGNISC PICRAQWSEL PRDLKVPPLL HNQSDPILRI LDDNIASSRV
201: NRRSSIRAAR YNDDDPVEPF TLTEHVDPCL RFVLIPAPVA AHHHVLGHYP CGHMLPLQQH CQYSGSSMLS PPQIASPSGQ KRAYLSVSLA PQPAIDMVLV
301: ASPNGPHLRL LKQAMALVVF SMRAIDRLAI VTNATTATRA FPLRRMTSHG KRMALQVIEH LCCVGGTDPV GALHKGLKIL EDRAHRNPSN CILHLSDHPV
401: RNYVGVDMNH SNIPVHQFHV GLGFGVQTGF IMHEFEELLA RLLGGVIGDT QLRIGEHGGM VRLGELRGGE ERRIPLDLVA DCGFILVGYS YLEGGREDQL
501: RTGEIAVGFE EKGDSRYCGM REMGLSIGGE RRSCCAERRD YHDPFMARRW AKHFNVYRA

Best Arabidopsis Sequence Match ( AT3G54780.3 )
(BLAST)

001: MVSKWKKMKL ALSLNLCNYL PRTLEEEPPS LALNSAETLS DAALLSPLNW PMTPTPSSYR RRLSRSSSKS SKQTCSICLN KMKEGCGHAI FTAECSHMFH
101: FHCIASNVKH GNQVCPVCRA KWKEIPIQKP SLDLPYYPFD RCNNDAAISL FRCLPPSQRA ITQGHPEPAT FDDDERLEEQ IVFDGETEVL KKENRDYVRM
201: MDMKVYPEVS AVPQSKSCEN FDVLVHLKAV TGDQISQYRR APIDLVTVLD ISGSMGGTKL ALLKRAMGFV IQNLGSSDRL SVIAFSSTAR RLFPLTRMSD
301: AGRQLALQAV NSLVANGGTN IVDGLRKGAK VMEDRLERNS VASIILLSDG RDTYTTNHPD PSYKDALAQC IGGLLSVAVQ ELRVEIEGVS PNVRLSSIKA
401: GSYSSLVTGD GHSGLVDLGD LYADEERDFL VSINIPVEED GHTPLLKLRC LYINPLTKEI TTLESHVLQI RRPEYVAEEK VVPIEVVRQR NRFLAAEAMA
501: QARTLAEHGD LEAAVKAIEN FRLVLAETVA AKSCDRFCVA LDSELKEMQG RMRSSHMYEA SGRAYILSGL SSHSWQRATA RGNSRDSSSF VQAYQTPSMA
601: EMLRRSQAMF LVSPSHHRLI QPLLSFASQP KPR

Arabidopsis Description

Zinc finger (C3HC4-type RING finger) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LN98]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.