Factsheet for TraesCS5A01G178300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G176000.2	Wheat	mitochondrion	98.67	98.67
TraesCS5D01G182800.1	Wheat	cytosol, plastid	99.43	92.25
Os09t0298500-01	Rice	nucleus	89.37	88.53
Zm00001d020013_P001	Maize	cytosol	84.06	84.22
OQU89212	Sorghum	cytosol	80.83	76.21
VIT_00s0475g00020.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	51.42	52.32
KRH11654	Soybean	nucleus, plastid	51.61	49.19
KRH36665	Soybean	nucleus	51.23	49.09
KRH51230	Soybean	nucleus	47.44	48.26
GSMUA_Achr9P22360_001	Banana	plastid	36.62	47.65
Solyc04g015280.2.1	Tomato	cytosol, nucleus, plastid	47.25	46.8
PGSC0003DMT400070011	Potato	nucleus	46.87	46.6
Bra024913.1-P	Field mustard	mitochondrion	43.64	44.06
CDY17702	Canola	mitochondrion	30.55	41.82
CDX77800	Canola	nucleus	42.69	39.61
TraesCS5A01G284900.1	Wheat	cytosol, mitochondrion, plastid	10.63	19.44
TraesCS5A01G512800.2	Wheat	mitochondrion	24.86	18.53
TraesCS2A01G358400.2	Wheat	cytosol, nucleus, peroxisome	22.2	17.92
TraesCS6A01G227300.1	Wheat	mitochondrion	24.1	17.86
TraesCS2A01G364100.2	Wheat	cytosol, mitochondrion	23.15	17.53
TraesCS7A01G423300.1	Wheat	cytosol	19.35	17.23
TraesCS6A01G375500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	23.15	16.6
TraesCS2A01G045100.1	Wheat	peroxisome	23.72	16.45
TraesCS5A01G513000.1	Wheat	cytosol	22.96	16.35
TraesCS1A01G146700.1	Wheat	mitochondrion	20.11	16.33
TraesCS3A01G393700.1	Wheat	cytosol	16.13	16.13
TraesCS5A01G359200.1	Wheat	cytosol, peroxisome, plastid	15.94	16.03
TraesCS5A01G513100.1	Wheat	cytosol, plastid	14.42	15.38
TraesCS1A01G421500.1	Wheat	plastid	18.03	15.1
TraesCS5A01G011500.1	Wheat	cytosol	14.23	15.0
TraesCS5A01G011700.1	Wheat	cytosol	13.85	13.88
TraesCS4A01G484700.1	Wheat	cytosol, unclear	12.71	12.79
TraesCS7A01G010300.1	Wheat	nucleus, unclear	12.33	12.4
TraesCS6A01G006500.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	13.09	9.76
TraesCS7A01G426800.1	Wheat	cytosol, peroxisome, plasma membrane	12.9	9.38
TraesCS5A01G011800.1	Wheat	plastid	11.95	7.42

Protein Annotations

EnsemblPlants:TraesCS5A01G178300.1	EnsemblPlantsGene:TraesCS5A01G178300	Gene3D:3.30.40.10	Gene3D:3.40.50.410	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001841	InterPro:IPR013083	InterPro:IPR036465	InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:vWFA_dom_sf	PANTHER:PTHR10579	PANTHER:PTHR10579:SF47	PFAM:PF00097	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF53300	SUPFAM:SSF57850	MapMan:35.1	:

Description

No Description!

Coordinates

chr5A:-:375842652..375847938

Molecular Weight (calculated)

57510.7 Da

IEP (calculated)

8.201

GRAVY (calculated)

-0.239

Length

527 amino acids

Sequence
(BLAST)

001: MAGGCGGEGT LARWRRAAAK RIGLSCASFF SSHAASPSPP PPKTISCSAV NAPAGSSDGE QEKLEEPTST RMADKNFCAI CLEALSTSSS GIDNCDRPAI
101: FTAQCSHSFH FLCIASNIRH GNVTCPICRA QWSQLPRDLK VPPLLHNQSD PILRILDDNI ATSRVNRRSS IRATRYNDDD PVEPYTLTEH VDPCLRFALI
201: PSPVAAHHHA LGHYPCGRMM PPQQHSQYSY SGSSMVSPPQ IASPSVQRRA YLSVSLAPQP AMDLVLVASP NGPHLRLLKQ AVALVVFSMR AIDRLAIVTN
301: ATTATRAFPL RRMSSHGKRM ALQVIEHLCS VGGIDPVGAL QKGLKILEDR AHQNPSNCIL HLSDHPIRSY AGVDMNRASI PVHQFHVGLG FGVQNSFVMH
401: EFEELLARLL GGVIGDTHLR IGEHGGVVRL GELRGGEERR IPLDLVADCG FILVGYSYLE GGREDRSRTG EVAVGFEEKS DSRYCGGRDM GTSIGGERRS
501: SCCAESWDHL DPFMARRWAK HFNVYRS

Best Arabidopsis Sequence Match ( AT5G60710.1 )
(BLAST)

001: MGSKWRKAKV ALGLNLCLYV PKTLEDSSPP RRSDDAVSLS PVIVQRPSTP TPSSSGLRLP RSMSKSSSKK TCAICLTAMK AGQGHAIFTA ECSHSFHFQC
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR

Arabidopsis Description

Retroelement pol polyprotein-like [Source:UniProtKB/TrEMBL;Acc:Q9FF49]
SUBAcon: [mitochondrion,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.