CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024913.1-P	Field mustard	mitochondrion	92.73	68.39
CDX77800	Canola	nucleus	84.94	57.57
VIT_00s0475g00020.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	48.57	36.1
KRH36665	Soybean	nucleus	50.65	35.45
KRH11654	Soybean	nucleus, plastid	50.91	35.44
PGSC0003DMT400070011	Potato	nucleus	43.9	31.89
KRH51230	Soybean	nucleus	42.6	31.66
Solyc04g015280.2.1	Tomato	cytosol, nucleus, plastid	43.64	31.58
Os09t0298500-01	Rice	nucleus	43.38	31.39
Zm00001d020013_P001	Maize	cytosol	42.34	30.99
TraesCS5A01G178300.1	Wheat	mitochondrion	41.82	30.55
TraesCS5B01G176000.2	Wheat	mitochondrion	41.56	30.36
TraesCS5D01G182800.1	Wheat	cytosol, plastid	42.08	28.52
OQU89212	Sorghum	cytosol	40.52	27.91
GSMUA_Achr9P22360_001	Banana	plastid	24.94	23.7
CDY37838	Canola	plastid	22.08	17.0
CDY72156	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	22.34	15.96
CDY67781	Canola	cytosol	21.82	15.88
CDY32819	Canola	cytosol	21.82	13.91
CDX89500	Canola	cytosol, peroxisome, plastid	23.38	13.37
CDY28148	Canola	plastid	23.12	13.11
CDY25618	Canola	nucleus, peroxisome, plastid	22.08	12.84
CDY31517	Canola	extracellular, mitochondrion, plastid	19.74	12.71
CDX93597	Canola	cytosol	21.04	12.6
CDY08765	Canola	plastid	23.12	12.57
CDY45614	Canola	plastid	23.12	12.5
CDY45010	Canola	mitochondrion, peroxisome	23.64	12.5
CDX91506	Canola	mitochondrion	19.74	12.5
CDX74871	Canola	mitochondrion	19.74	12.46
CDY52535	Canola	plastid	22.86	12.39
CDY52708	Canola	extracellular, mitochondrion, plastid	19.22	12.29
CDX72660	Canola	cytosol, nucleus, peroxisome, plastid	21.82	12.26
CDY31616	Canola	nucleus	21.56	12.08
CDX95099	Canola	cytosol	15.06	10.32
CDX93598	Canola	endoplasmic reticulum, golgi, mitochondrion, vacuole	0.0	0.0

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	GO:A0A078FY41	UniProt:A0A078FY41	EnsemblPlants:CDY17702
ProteinID:CDY17702	ProteinID:CDY17702.1	EnsemblPlantsGene:GSBRNA2T00001925001	InterPro:IPR001841	InterPro:IPR013083	InterPro:IPR036465
PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR10579	PANTHER:PTHR10579:SF47	SMART:SM00184	SUPFAM:SSF53300
SUPFAM:SSF57850	UniParc:UPI0004EE8A01	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf

Description

BnaA06g35210DBnaA06g35210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FY41]

Coordinates

chrLK032076:-:658819..661363

Molecular Weight (calculated)

42725.6 Da

IEP (calculated)

9.424

GRAVY (calculated)

-0.282

Length

385 amino acids

Sequence
(BLAST)

001: MGMGRTTSKL RKAAKRLVLA ACRSLSLLPL SSRGSTAVIK PENVYLPHHH EVHKEAIDKV DSTHATSTIL CAICLEPLSH CDDNSPSEAT FTGQCSHSFH
101: FSCIASNVRH GSVTCPVCRA HWTHLPPPSF PHLSERQLDD PVLRILDDSI ATSRVQRRSL LRSARYDDDD PIAPPHSNTN YPRLDFSLTP LTVYPNLVSY
201: PCCLHPLQGA YSPLQMCRTS VLPLPEDYHC VCTSLSTRSA YLSVKLKDPQ PIDLVLVASP SGPHSRLLKQ AMILVTSSLR PVDRLAIVTY SCVAARVFAL
301: RRMTSCGKRA ALRVIDRLFY TGQTDPSQGI LKGIKVLKDR AYKNPQRIAE AVEIHGGKVP RFDDSDLELH VSKRSRKKTK QKGNE

Best Arabidopsis Sequence Match ( AT2G38970.1 )
(BLAST)

001: MGTRWRRMKL ALGLNLCTYL PRTLEESPTP LNSTERLSDV ALLSPLNWPM TPTPSSHGLK LSRNSSKSSK TCSICLNKMK EGGGHALFTA ECSHSFHFHC
101: IASNVKHGNQ VCPVCRAKWK EIPMQHPSFD LPYLFARSYN NDAAISLVHR LPRSRGVMNQ GRGLAPEPSM FDDDERLEQQ LVFSGKSYSD ALENNHPVRM
201: MDLKIYPEVS AVPRADSREK FDVLVHLRAA AMVTGNANSL NNQISRYPRA PVDLVTVLDI SGSMAGTKLA LLKRAMGFVI QNLGSNDRLS VIAFSSTARR
301: LFPLTKMSDA GRQRALQAVN SVVANGGTNI AEGLRKGVKV MEDRRDKNPV ASIILLSDGR DTYTMNQADP NYKLLLPLSM HGCESKRFQI PVHSFGFGSD
401: HDASLMHSVS ETSGGTFSFI ESESVIQDAL AQCIGGLLSV AVQELRLEIE GMCSDVHLSS IKAGSYQSLV SGDGRSGCVD IGDLYADEER DFLISVNIPP
501: QKDGNETPLL KMRCVYKDLL TKEIVTLQSH MLKIQRPETV GQEVVVSIEV DRQRNRFLAA EAMVKARALA EREDLAAGVT AIQNFRVALA ETVSAKSGDG
601: FCVALDRELK EMQERMASRH VYEVSGRAYI LSGLSSHSWQ RATSRGESGD GSSFVQAYYQ TPSMVEMLHR SQATSHHHRL IQPLFASQPK PR

Arabidopsis Description

Zinc finger (C3HC4-type RING finger) family protein [Source:UniProtKB/TrEMBL;Acc:F4IU12]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.