CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67781	Canola	cytosol	87.58	100.0
CDY72156	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	82.45	92.39
AT1G08050.1	Thale cress	plastid	77.15	72.7
CDX93597	Canola	cytosol	70.86	66.56
CDX95099	Canola	cytosol	60.6	65.12
CDY31517	Canola	extracellular, mitochondrion, plastid	48.51	49.0
CDY52708	Canola	extracellular, mitochondrion, plastid	48.01	48.17
CDX74871	Canola	mitochondrion	46.52	46.07
CDX91506	Canola	mitochondrion	46.19	45.89
VIT_06s0004g02630.t01	Wine grape	mitochondrion, nucleus	54.64	45.27
GSMUA_Achr11P...	Banana	mitochondrion	46.36	44.8
GSMUA_Achr5P20480_001	Banana	mitochondrion	46.52	44.32
Solyc11g069600.1.1	Tomato	plastid	53.15	43.79
PGSC0003DMT400020896	Potato	mitochondrion, plastid	53.15	43.79
GSMUA_Achr1P03470_001	Banana	mitochondrion, plastid	45.2	42.66
GSMUA_Achr11P...	Banana	mitochondrion	37.09	41.64
Zm00001d051119_P001	Maize	nucleus	46.85	41.13
Zm00001d017247_P002	Maize	mitochondrion	47.35	41.09
OQU93256	Sorghum	mitochondrion	47.19	40.83
Os02t0619600-01	Rice	mitochondrion	47.85	40.76
HORVU6Hr1G057680.2	Barley	cytosol, mitochondrion, nucleus	48.01	40.73
Zm00001d027622_P001	Maize	mitochondrion	46.52	40.61
TraesCS6B01G254400.1	Wheat	mitochondrion	47.68	40.56
TraesCS6D01G207700.2	Wheat	mitochondrion	47.68	40.56
OQU85324	Sorghum	mitochondrion	47.19	40.54
TraesCS6A01G227300.1	Wheat	mitochondrion	47.52	40.37
HORVU4Hr1G084340.1	Barley	mitochondrion	47.19	40.31
TraesCS4B01G344100.1	Wheat	mitochondrion	47.02	40.17
TraesCS2D01G361900.1	Wheat	mitochondrion	45.86	40.03
TraesCS5A01G512800.2	Wheat	mitochondrion	46.85	40.03
TraesCS2B01G382300.1	Wheat	mitochondrion	46.03	40.0
TraesCS2A01G364100.2	Wheat	cytosol, mitochondrion	46.03	39.94
TraesCS4D01G339200.1	Wheat	mitochondrion	46.69	39.89
Os03t0142500-01	Rice	plasma membrane	45.7	39.77
HORVU2Hr1G088110.4	Barley	cytosol, mitochondrion	45.53	39.29
Os04t0508800-01	Rice	plasma membrane	45.7	38.98
OQU81931	Sorghum	mitochondrion	43.71	37.88
Zm00001d025825_P001	Maize	mitochondrion	43.71	37.5
GSMUA_Achr2P11780_001	Banana	golgi	25.0	31.99
CDY28148	Canola	plastid	26.82	23.86
CDY25618	Canola	nucleus, peroxisome, plastid	24.83	22.66
CDX72660	Canola	cytosol, nucleus, peroxisome, plastid	25.66	22.63
CDY45010	Canola	mitochondrion, peroxisome	26.99	22.39
CDY08765	Canola	plastid	25.83	22.03
CDY31616	Canola	nucleus	25.0	21.98
CDY17702	Canola	mitochondrion	13.91	21.82
CDX89500	Canola	cytosol, peroxisome, plastid	24.17	21.69
CDY52535	Canola	plastid	25.5	21.69
CDY45614	Canola	plastid	25.5	21.63
CDY37838	Canola	plastid	17.88	21.6
CDX77800	Canola	nucleus	18.05	19.19
CDX93598	Canola	endoplasmic reticulum, golgi, mitochondrion, vacuole	1.66	2.59

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	GO:A0A078H5S1	UniProt:A0A078H5S1	EnsemblPlants:CDY32819
ProteinID:CDY32819	ProteinID:CDY32819.1	EnsemblPlantsGene:GSBRNA2T00052903001	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083
InterPro:IPR036465	PFAM:PF00092	PFAM:PF14624	PFAM:PF17123	PFscan:PS50089	PFscan:PS50234
PANTHER:PTHR10579	PANTHER:PTHR10579:SF97	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850
UniParc:UPI0004EE2E30	InterPro:VWF_A	InterPro:Vwaint_dom	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

BnaC08g02410DBnaC08g02410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H5S1]

Coordinates

chrLK032300:-:80864..82902

Molecular Weight (calculated)

65984.5 Da

IEP (calculated)

6.612

GRAVY (calculated)

-0.281

Length

604 amino acids

Sequence
(BLAST)

001: MENPNKSPDP SSPPPRSTSS SGLPFSKSKC AICLDEIRKE DGKAIFTAEC SHSFHFGCIT SNVKHGNRIC PLCRTEWKQV PVFVNDRVVP APTFPVQTGF
101: EDDESLPVSQ PSGVAAEHQA LEIKLLPQVS AVEKSVARVD FAVLVHLKAA EGASDDRPAT RAPLDLIAVL DVSGSMEGTK LHLLKNAVAF VIDNLGETDR
201: LSVIAFSSGA RRLFPLRLMS ERGKREAIQA VNSLVAGGGT NIAEGLKIGA RVIEDRRWKN PVSGMMLLSD GQDNFTLSRS HSHSHSHSHS LVRPRADYQC
301: LIPSSRIPIH TFGFGADHDA ELMHTISQVS SGTFSFIETE TVIRDAFAQC IGGLLSVVAL DQVVEIECLH EEGLKISSIK AGSYRSRVSS DGRTAKIDVG
401: DMYAEEERDF LVILEIPRCE DESMPLVKIR CVYKDAVSRE IVRVESGELS IQRPEQLTGE EVVSVEVDRQ LNRFLVSEAM SEARVLADGG DLEGAVGILR
501: NRERELAETQ SARARDGLCL SLSSELGALQ ERMTSRRMYE RSGRAYAFSS MSSHSAQRAT AREPVCGSAA PQAYQTPSMA RMVSRSQELG IKSPKPSPAR
601: RDRS

Best Arabidopsis Sequence Match ( AT1G08050.1 )
(BLAST)

001: MENPNNLRES KSHLNLNECL TLPKTLDPSS PSPSDASRSS VDPNRPDSSS SRPGSTPSSS GLRFSKGRCA ICLYEIRKED GKAIFTAECS HSFHFDCITS
101: NVKHGNRICP LCRTQWKQVP LCDVDSVPTF VAQRGFEDDE PLPQGDTQIH SDGHRSDHQA LEIKLFPEVS ALAKPVSRAD FAVLVHLKAE GVSDDARRAR
201: APLDLITVLD VSGSMDGVKM ELMKNAMSFV IQNLGETDRL SVISFSSMAR RLFPLRLMSE TGKQAAMQAV NSLVADGGTN IAEGLKIGAR VIEGRRWKNP
301: VSGMMLLSDG QDNFTFSHAG VRLRTDYESL LPSSCRIPIH TFGFGSDHDA ELMHTISEVS SGTFSFIETE TVIQDAFAQC IGGLLSVVIL EQVVEIECIH
401: EQGLKISSIK AGSYRSRIAP DARTATIDVG DMYAEEERDF LVLLEIPCCD NGSGESESLS LLKVRCVYKD PVTKEIVHVE SGELSIQRPM KLTGKEVVSI
501: EVDRQLNRFL VSQAMSEARV LADGGDLSGA VGILRNRERE LSETPSAQSS DRLCQSLSSE LSALQERMTS RRMYRTSGRA YAFSSMSSHS AQRATARGDS
601: TQGFSPVQAY QTSPMARMVT RSQLLVLESP TKPSPGRGEQ S

Arabidopsis Description

T6D22.13 [Source:UniProtKB/TrEMBL;Acc:Q9LN03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.