Factsheet for AT1G08050.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72156	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	66.3	78.85
CDY67781	Canola	cytosol	64.27	77.88
CDY32819	Canola	cytosol	72.7	77.15
Bra030712.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	73.48	77.09
CDX93597	Canola	cytosol	69.89	69.67
CDX95099	Canola	cytosol	60.53	69.04
AT5G60710.1	Thale cress	extracellular, mitochondrion, plastid	53.67	48.86
GSMUA_Achr5P20480_001	Banana	mitochondrion	47.43	47.95
VIT_06s0004g02630.t01	Wine grape	mitochondrion, nucleus	54.29	47.74
GSMUA_Achr11P...	Banana	mitochondrion	46.33	47.52
AT2G38970.1	Thale cress	mitochondrion	49.92	46.24
Solyc11g069600.1.1	Tomato	plastid	52.73	46.11
PGSC0003DMT400020896	Potato	mitochondrion, plastid	52.42	45.84
GSMUA_Achr1P03470_001	Banana	mitochondrion, plastid	45.24	45.31
GSMUA_Achr11P...	Banana	mitochondrion	36.66	43.68
Zm00001d017247_P002	Maize	mitochondrion	46.96	43.25
Zm00001d051119_P001	Maize	nucleus	45.87	42.73
OQU85324	Sorghum	mitochondrion	46.49	42.39
Os02t0619600-01	Rice	mitochondrion	46.8	42.31
HORVU6Hr1G057680.2	Barley	cytosol, mitochondrion, nucleus	46.33	41.71
TraesCS6D01G207700.2	Wheat	mitochondrion	46.02	41.55
TraesCS6B01G254400.1	Wheat	mitochondrion	46.02	41.55
OQU93256	Sorghum	mitochondrion	45.24	41.55
Zm00001d027622_P001	Maize	mitochondrion	44.77	41.47
TraesCS2B01G382300.1	Wheat	mitochondrion	44.93	41.44
TraesCS6A01G227300.1	Wheat	mitochondrion	45.87	41.35
TraesCS4D01G339200.1	Wheat	mitochondrion	45.55	41.3
TraesCS4B01G344100.1	Wheat	mitochondrion	45.55	41.3
TraesCS2A01G364100.2	Wheat	cytosol, mitochondrion	44.77	41.24
AT3G54780.4	Thale cress	endoplasmic reticulum, extracellular, plastid	43.84	41.2
Os03t0142500-01	Rice	plasma membrane	44.46	41.07
TraesCS5A01G512800.2	Wheat	mitochondrion	45.24	41.02
TraesCS2D01G361900.1	Wheat	mitochondrion	44.15	40.9
Os04t0508800-01	Rice	plasma membrane	45.09	40.82
HORVU4Hr1G084340.1	Barley	mitochondrion	44.93	40.74
HORVU2Hr1G088110.4	Barley	cytosol, mitochondrion	44.31	40.57
OQU81931	Sorghum	mitochondrion	43.53	40.03
Zm00001d025825_P001	Maize	mitochondrion	43.68	39.77
GSMUA_Achr2P11780_001	Banana	golgi	24.96	33.9
Bra018663.1-P	Field mustard	nucleus	68.02	33.06
AT2G22680.1	Thale cress	cytosol, peroxisome, plastid	25.27	23.72
AT5G65683.1	Thale cress	peroxisome, plastid	25.43	22.73
AT5G49665.1	Thale cress	plastid	26.21	22.7
AT4G37890.1	Thale cress	nucleus	25.59	22.19

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	EntrezGene:837321	UniProt:A0A178WEJ2	ProteinID:AAF79840.1
ProteinID:AEE28235.1	ArrayExpress:AT1G08050	EnsemblPlantsGene:AT1G08050	RefSeq:AT1G08050	TAIR:AT1G08050	RefSeq:AT1G08050-TAIR-G
EnsemblPlants:AT1G08050.1	TAIR:AT1G08050.1	Unigene:At.42277	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0016020	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	RefSeq:NP_172283.1
ProteinID:OAP16221.1	PFAM:PF00092	PFAM:PF14624	PFAM:PF17123	PO:PO:0000084	PO:PO:0000293
PO:PO:0007095	PO:PO:0007103	PO:PO:0007611	PO:PO:0007616	PO:PO:0009005	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009046	PO:PO:0009047	PO:PO:0020030
PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579
PANTHER:PTHR10579:SF97	UniProt:Q9LN03	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850
UniParc:UPI000009D979	InterPro:VWF_A	InterPro:Vwaint_dom	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

T6D22.13 [Source:UniProtKB/TrEMBL;Acc:Q9LN03]

Coordinates

chr1:-:2498794..2501581

Molecular Weight (calculated)

70122.2 Da

IEP (calculated)

6.139

GRAVY (calculated)

-0.318

Length

641 amino acids

Sequence
(BLAST)

001: MENPNNLRES KSHLNLNECL TLPKTLDPSS PSPSDASRSS VDPNRPDSSS SRPGSTPSSS GLRFSKGRCA ICLYEIRKED GKAIFTAECS HSFHFDCITS
101: NVKHGNRICP LCRTQWKQVP LCDVDSVPTF VAQRGFEDDE PLPQGDTQIH SDGHRSDHQA LEIKLFPEVS ALAKPVSRAD FAVLVHLKAE GVSDDARRAR
201: APLDLITVLD VSGSMDGVKM ELMKNAMSFV IQNLGETDRL SVISFSSMAR RLFPLRLMSE TGKQAAMQAV NSLVADGGTN IAEGLKIGAR VIEGRRWKNP
301: VSGMMLLSDG QDNFTFSHAG VRLRTDYESL LPSSCRIPIH TFGFGSDHDA ELMHTISEVS SGTFSFIETE TVIQDAFAQC IGGLLSVVIL EQVVEIECIH
401: EQGLKISSIK AGSYRSRIAP DARTATIDVG DMYAEEERDF LVLLEIPCCD NGSGESESLS LLKVRCVYKD PVTKEIVHVE SGELSIQRPM KLTGKEVVSI
501: EVDRQLNRFL VSQAMSEARV LADGGDLSGA VGILRNRERE LSETPSAQSS DRLCQSLSSE LSALQERMTS RRMYRTSGRA YAFSSMSSHS AQRATARGDS
601: TQGFSPVQAY QTSPMARMVT RSQLLVLESP TKPSPGRGEQ S

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.