Factsheet for TraesCS6B01G254400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G207700.2	Wheat	mitochondrion	98.31	98.31
TraesCS6A01G227300.1	Wheat	mitochondrion	97.61	97.47
HORVU6Hr1G057680.2	Barley	cytosol, mitochondrion, nucleus	97.04	96.77
OQU85324	Sorghum	mitochondrion	83.66	84.5
Zm00001d017247_P002	Maize	mitochondrion	82.68	84.34
Os02t0619600-01	Rice	mitochondrion	84.08	84.2
Zm00001d051119_P001	Maize	nucleus	79.01	81.54
TraesCS2B01G382300.1	Wheat	mitochondrion	70.99	72.52
GSMUA_Achr5P20480_001	Banana	mitochondrion	53.38	59.78
GSMUA_Achr11P...	Banana	mitochondrion	51.69	58.72
GSMUA_Achr1P03470_001	Banana	mitochondrion, plastid	51.13	56.72
VIT_13s0019g04440.t01	Wine grape	endoplasmic reticulum	54.23	54.23
VIT_06s0004g02630.t01	Wine grape	mitochondrion, nucleus	54.51	53.09
CDY31517	Canola	extracellular, mitochondrion, plastid	44.23	52.51
Bra005066.1-P	Field mustard	mitochondrion	48.03	51.98
PGSC0003DMT400059986	Potato	nucleus	52.96	51.72
CDY52708	Canola	extracellular, mitochondrion, plastid	43.66	51.49
Solyc05g056140.2.1	Tomato	nucleus	52.68	51.37
CDX91506	Canola	mitochondrion	43.8	51.15
CDX74871	Canola	mitochondrion	43.94	51.15
GSMUA_Achr11P...	Banana	mitochondrion	38.73	51.12
Bra020234.1-P	Field mustard	mitochondrion	49.58	50.65
AT5G60710.1	Thale cress	extracellular, mitochondrion, plastid	50.14	50.57
PGSC0003DMT400020896	Potato	mitochondrion, plastid	52.11	50.48
Solyc11g069600.1.1	Tomato	plastid	51.97	50.34
TraesCS6B01G413100.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	52.39	50.34
AT2G38970.1	Thale cress	mitochondrion	48.73	50.0
CDY72156	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	37.32	49.17
TraesCS4B01G344100.1	Wheat	mitochondrion	48.87	49.08
Bra002456.1-P	Field mustard	mitochondrion, plastid	48.17	48.86
CDY67781	Canola	cytosol	36.34	48.77
CDY32819	Canola	cytosol	40.56	47.68
Bra030712.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	40.42	46.97
AT3G54780.4	Thale cress	endoplasmic reticulum, extracellular, plastid	44.51	46.33
TraesCS5B01G338500.1	Wheat	cytosol	33.24	46.09
AT1G08050.1	Thale cress	plastid	41.55	46.02
TraesCS2B01G377900.1	Wheat	cytosol	40.28	44.27
TraesCS3B01G425600.1	Wheat	cytosol	25.49	44.04
CDX93597	Canola	cytosol	39.86	44.01
TraesCS5B01G284200.1	Wheat	cytosol	30.99	43.91
GSMUA_Achr2P11780_001	Banana	golgi	29.01	43.64
CDX95099	Canola	cytosol	34.37	43.42
TraesCS1B01G164800.1	Wheat	cytosol, nucleus, peroxisome	38.45	42.92
TraesCS1B01G456800.1	Wheat	cytosol	35.35	41.63
TraesCS4B01G344200.1	Wheat	cytosol	41.97	41.33
TraesCS2B01G515000.1	Wheat	cytosol	28.59	38.45
TraesCS4B01G358100.1	Wheat	plastid	37.61	37.5
TraesCS3B01G577600.1	Wheat	cytosol	20.42	27.67
TraesCS5B01G009400.1	Wheat	cytosol	18.59	27.62
TraesCS5B01G009600.1	Wheat	cytosol	19.72	26.67
TraesCS5B01G176000.2	Wheat	mitochondrion	17.89	24.1
TraesCS2B01G057300.1	Wheat	peroxisome	25.77	23.77
TraesCS7B01G344600.1	Wheat	mitochondrion	11.41	23.08
Bra018663.1-P	Field mustard	nucleus	39.3	21.15
TraesCS2B01G026900.1	Wheat	cytosol	17.32	20.53
TraesCS6B01G057500.1	Wheat	cytosol	13.66	19.25
TraesCS7B01G327100.1	Wheat	cytosol, peroxisome, plasma membrane	17.89	17.45
TraesCS5B01G009700.1	Wheat	mitochondrion	18.87	15.6

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083
InterPro:IPR036465	PFAM:PF00092	PFAM:PF14624	PFAM:PF17123	PFscan:PS50089	PFscan:PS50234
PANTHER:PTHR10579	PANTHER:PTHR10579:SF49	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850
EnsemblPlantsGene:TraesCS6B01G254400	EnsemblPlants:TraesCS6B01G254400.1	InterPro:VWF_A	InterPro:Vwaint_dom	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
TIGR:cd01466	TIGR:cd16448	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

No Description!

Coordinates

chr6B:-:457419736..457425082

Molecular Weight (calculated)

77382.1 Da

IEP (calculated)

8.130

GRAVY (calculated)

-0.284

Length

710 amino acids

Sequence
(BLAST)

001: MEGMWRKAKR AMGIGFCAHL PAVAGDREDC TSERRASDAF SQDSAALAAA HASAPNTPAQ AEAAGALLRR SKSGAKSSKK TCAICFDSMK PGHGQALFTA
101: ECSHMFHFHC ISSSVKHGNY VCPVCRAKWK EIPFNRSLSS IVPRGRSGLN VNQARLPQQD AYMALLRQVP TRQREAPALH TSEPVEFNDD EPLQLMEAAD
201: NCDVRSSKTV EMKTYSEFSA IPQSSSQDDF AVLIHLKAPC ANPEQITSRP VNATSVGYPT SRAPVDLVTL LDVSGSMAGT KLALLKRAMG FVIQHLGPSD
301: RLSVIAFSST ARRLFHLRRM SHSGRQQALQ AVNSLGAGGG TNIADALKKA AKVIEDRSYK NPVCSIILLS DGQDTYNISS NVRGTRPDYR SLVPSSILNQ
401: AVGIVPVHGF GFGADHDSDA LHSIAEVSGG TFSFIEDEGV IQDAFAQCIG GLLSVVVQDM RLTVQCVHTG VQLRSIKSGS YLSKVAGDGR NGSIDVGHLY
501: ADEERDFLLS VSFPQSREQT ILLKVAFSYR DPMTNECVKI QGDEVMILRP KSRSPEPVCM EVDRERNRVC AADSIEAARA AAETGVLSEA VAILEECRRV
601: LLESFSSRNG DRLCMALDAE LREMQERMAS RQCYEASGRA YLLSGLSSHS WQRATTRGDS TDSSSLVYSY QTPSMVQMLQ RSQNHCPSPQ IPRPQIIVPT
701: RSFMQKPQPR

Best Arabidopsis Sequence Match ( AT5G60710.1 )
(BLAST)

001: MGSKWRKAKV ALGLNLCLYV PKTLEDSSPP RRSDDAVSLS PVIVQRPSTP TPSSSGLRLP RSMSKSSSKK TCAICLTAMK AGQGHAIFTA ECSHSFHFQC
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR

Arabidopsis Description

Retroelement pol polyprotein-like [Source:UniProtKB/TrEMBL;Acc:Q9FF49]
SUBAcon: [mitochondrion,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.