Factsheet for TraesCS5B01G338500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G348200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	89.06	80.28
TraesCS5D01G472700.1	Wheat	cytosol	91.41	78.0
TraesCS1B01G456800.1	Wheat	cytosol	54.1	45.94
TraesCS5B01G284200.1	Wheat	cytosol	43.55	44.51
TraesCS3B01G425600.1	Wheat	cytosol	34.96	43.55
TraesCS2B01G377900.1	Wheat	cytosol	54.3	43.03
TraesCS1B01G164800.1	Wheat	cytosol, nucleus, peroxisome	53.12	42.77
TraesCS2B01G515000.1	Wheat	cytosol	42.38	41.1
TraesCS4B01G344200.1	Wheat	cytosol	56.05	39.81
TraesCS4B01G358100.1	Wheat	plastid	54.3	39.04
TraesCS6B01G254400.1	Wheat	mitochondrion	46.09	33.24
TraesCS2B01G382300.1	Wheat	mitochondrion	44.34	32.66
TraesCS4B01G344100.1	Wheat	mitochondrion	43.16	31.26
TraesCS6B01G413100.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	43.16	29.91
TraesCS5B01G009400.1	Wheat	cytosol	22.66	24.27
TraesCS5B01G009600.1	Wheat	cytosol	23.44	22.86
TraesCS3B01G577600.1	Wheat	cytosol	21.48	20.99
TraesCS2B01G057300.1	Wheat	peroxisome	27.93	18.57
TraesCS5B01G176000.2	Wheat	mitochondrion	17.58	17.08
TraesCS2B01G026900.1	Wheat	cytosol	18.75	16.03
TraesCS6B01G057500.1	Wheat	cytosol	15.04	15.28
TraesCS7B01G344600.1	Wheat	mitochondrion	10.35	15.1
TraesCS7B01G327100.1	Wheat	cytosol, peroxisome, plasma membrane	20.7	14.56
TraesCS5B01G009700.1	Wheat	mitochondrion	20.9	12.46

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083
InterPro:IPR036465	PFAM:PF13519	PFAM:PF14624	PFAM:PF17123	PFscan:PS50089	PFscan:PS50234
PANTHER:PTHR10579	PANTHER:PTHR10579:SF72	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850
EnsemblPlantsGene:TraesCS5B01G338500	EnsemblPlants:TraesCS5B01G338500.1	InterPro:VWF_A	InterPro:Vwaint_dom	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:522482350..522490232

Molecular Weight (calculated)

54639.8 Da

IEP (calculated)

6.783

GRAVY (calculated)

-0.234

Length

512 amino acids

Sequence
(BLAST)

001: METRCAVCHG DMGRGHATFT AECSHSFHLR CVHHQTACPL CFTPWRDVPG VAPAQDLVFR DDEPLEPQPA AAAAEKTTAS GGVMSIKTHC EYPAIAKDAS
101: RDGFAVLVHA KAPALAPAAA KAARAPLDLV MVLDVSGSMG GRKLALLKQA VGFVVDKLGP HDRLSLVSFS CDARRLTRLT RMSDAGRALT ERTVESLAAG
201: GGTNIKEGLR EAAKVIDGRR YRNAVTGVIL LSDGQDNYTL SSRFYNHDVA TDYSVLVPPS LIRTGDGHRR HVRLHENEAV IQDSFAQCIG GLLSVAAQEA
301: RVAVECVCPG VRVRSIKSGR YKSRVDADGR TAAVEVGELY ADEERRFLLF VDVPKAGATD DVTSLMKSVD VAGEEVAVKR PVEAPEAEPD VEVERERLRV
401: QAAEDIAAAR AAAERGEHAE ASELLSRRRM ALRQSPLGAS GDAGCAELAA ELGERVEDRR EYDLSGRASL LCGMSAHSQQ RTSVKVGRRG TAIAALKDDD
501: AAAAFGGDGG SR

Best Arabidopsis Sequence Match ( AT1G08050.1 )
(BLAST)

001: MENPNNLRES KSHLNLNECL TLPKTLDPSS PSPSDASRSS VDPNRPDSSS SRPGSTPSSS GLRFSKGRCA ICLYEIRKED GKAIFTAECS HSFHFDCITS
101: NVKHGNRICP LCRTQWKQVP LCDVDSVPTF VAQRGFEDDE PLPQGDTQIH SDGHRSDHQA LEIKLFPEVS ALAKPVSRAD FAVLVHLKAE GVSDDARRAR
201: APLDLITVLD VSGSMDGVKM ELMKNAMSFV IQNLGETDRL SVISFSSMAR RLFPLRLMSE TGKQAAMQAV NSLVADGGTN IAEGLKIGAR VIEGRRWKNP
301: VSGMMLLSDG QDNFTFSHAG VRLRTDYESL LPSSCRIPIH TFGFGSDHDA ELMHTISEVS SGTFSFIETE TVIQDAFAQC IGGLLSVVIL EQVVEIECIH
401: EQGLKISSIK AGSYRSRIAP DARTATIDVG DMYAEEERDF LVLLEIPCCD NGSGESESLS LLKVRCVYKD PVTKEIVHVE SGELSIQRPM KLTGKEVVSI
501: EVDRQLNRFL VSQAMSEARV LADGGDLSGA VGILRNRERE LSETPSAQSS DRLCQSLSSE LSALQERMTS RRMYRTSGRA YAFSSMSSHS AQRATARGDS
601: TQGFSPVQAY QTSPMARMVT RSQLLVLESP TKPSPGRGEQ S

Arabidopsis Description

T6D22.13 [Source:UniProtKB/TrEMBL;Acc:Q9LN03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.