Factsheet for TraesCS2B01G377900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G357400.1	Wheat	cytosol, nucleus, peroxisome	94.27	94.27
TraesCS2A01G358400.2	Wheat	cytosol, nucleus, peroxisome	93.96	92.96
HORVU0Hr1G005150.3	Barley	cytosol, vacuole	91.18	80.25
TraesCS4B01G344200.1	Wheat	cytosol	70.12	62.83
EER95529	Sorghum	nucleus	63.0	62.62
OQU93258	Sorghum	cytosol	63.0	57.98
TraesCS5B01G338500.1	Wheat	cytosol	43.03	54.3
Zm00001d027621_P001	Maize	cytosol	62.69	54.14
TraesCS5B01G284200.1	Wheat	cytosol	40.25	51.9
TraesCS1B01G456800.1	Wheat	cytosol	47.37	50.75
TraesCS1B01G164800.1	Wheat	cytosol, nucleus, peroxisome	49.23	50.0
TraesCS3B01G425600.1	Wheat	cytosol	31.27	49.15
TraesCS2B01G515000.1	Wheat	cytosol	38.85	47.54
TraesCS4B01G358100.1	Wheat	plastid	45.05	40.87
TraesCS6B01G254400.1	Wheat	mitochondrion	44.27	40.28
TraesCS2B01G382300.1	Wheat	mitochondrion	42.26	39.28
TraesCS4B01G344100.1	Wheat	mitochondrion	41.33	37.77
TraesCS6B01G413100.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	41.33	36.13
TraesCS5B01G009400.1	Wheat	cytosol	19.66	26.57
TraesCS3B01G577600.1	Wheat	cytosol	19.81	24.43
TraesCS5B01G009600.1	Wheat	cytosol	19.81	24.38
TraesCS2B01G057300.1	Wheat	peroxisome	26.47	22.21
TraesCS5B01G176000.2	Wheat	mitochondrion	17.8	21.82
TraesCS7B01G344600.1	Wheat	mitochondrion	10.37	19.09
TraesCS2B01G026900.1	Wheat	cytosol	17.34	18.7
TraesCS7B01G327100.1	Wheat	cytosol, peroxisome, plasma membrane	19.97	17.72
TraesCS6B01G057500.1	Wheat	cytosol	13.78	17.66
TraesCS5B01G009700.1	Wheat	mitochondrion	20.9	15.72

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	ncoils:Coil	InterPro:IPR001841	InterPro:IPR002035
InterPro:IPR013083	InterPro:IPR036465	PFAM:PF00092	PFAM:PF14624	PFAM:PF17123	PFscan:PS50089
PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF72	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300
SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS2B01G377900	EnsemblPlants:TraesCS2B01G377900.1	InterPro:VWF_A	InterPro:Vwaint_dom	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	TIGR:cd16448	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

No Description!

Coordinates

chr2B:-:540806646..540808698

Molecular Weight (calculated)

68890.4 Da

IEP (calculated)

6.076

GRAVY (calculated)

-0.198

Length

646 amino acids

Sequence
(BLAST)

001: MEGTKQTNPC AICLGGMGAG GEQAIFTAEC SHTFHFHCIS ASVEHGNLLC PLCNAQWREL PFVRPPASMP TSQPPSVDAV QPRRVRAHSE DTVVFDDDEQ
101: VGPPDSRRQA GAASDEAVVV KTHGHYSAVA RDSSDDNFAV LVHLKAPGIA GSGTEAAGDA PAQRAPVDLV TVLDVSRSMH GSKLALLKQA MRFVIDILGP
201: DDRLSVVSFS SRARRVTRLT RMSDAGKALC VRAVESLTAR TGTNIAEGLR TAAKVLDERR YRNGVSSVVL LTDGQDNYTP MRQAFGRGLP HYAALVPPSF
301: ARTGTSTGDR ATPVHTFGFG NDHDAAAMHA VSEATGGTFS FIENEAVIQD AFAQCVGGLL SVVVQEARIA VQCLDPGVRI GSVKSGLYES SVDEDGRAAL
401: IVVGELYADE ERRFLLFLVV PRAEATDGDL TALIKVSCLY RDAAAGADVN VMAEDMVVAR PEHAVDAERS VEVERERVRV EATEDMAAAR AAAERSEHQE
501: AVEILESRRG AVAQSDAARG GDPMIVALEI ELRDMRRRVS SRQNYARSGR AYMLAGMSAH MQQRGSSSQL QLPSVIAFQD GAVTTTAATH QVSQQAATLP
601: YATPAMLAML LRSRRAREAS AAGAQRQPGA PEGAQGSEPT VPKELN

Best Arabidopsis Sequence Match ( AT1G08050.1 )
(BLAST)

001: MENPNNLRES KSHLNLNECL TLPKTLDPSS PSPSDASRSS VDPNRPDSSS SRPGSTPSSS GLRFSKGRCA ICLYEIRKED GKAIFTAECS HSFHFDCITS
101: NVKHGNRICP LCRTQWKQVP LCDVDSVPTF VAQRGFEDDE PLPQGDTQIH SDGHRSDHQA LEIKLFPEVS ALAKPVSRAD FAVLVHLKAE GVSDDARRAR
201: APLDLITVLD VSGSMDGVKM ELMKNAMSFV IQNLGETDRL SVISFSSMAR RLFPLRLMSE TGKQAAMQAV NSLVADGGTN IAEGLKIGAR VIEGRRWKNP
301: VSGMMLLSDG QDNFTFSHAG VRLRTDYESL LPSSCRIPIH TFGFGSDHDA ELMHTISEVS SGTFSFIETE TVIQDAFAQC IGGLLSVVIL EQVVEIECIH
401: EQGLKISSIK AGSYRSRIAP DARTATIDVG DMYAEEERDF LVLLEIPCCD NGSGESESLS LLKVRCVYKD PVTKEIVHVE SGELSIQRPM KLTGKEVVSI
501: EVDRQLNRFL VSQAMSEARV LADGGDLSGA VGILRNRERE LSETPSAQSS DRLCQSLSSE LSALQERMTS RRMYRTSGRA YAFSSMSSHS AQRATARGDS
601: TQGFSPVQAY QTSPMARMVT RSQLLVLESP TKPSPGRGEQ S

Arabidopsis Description

T6D22.13 [Source:UniProtKB/TrEMBL;Acc:Q9LN03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.