Factsheet for TraesCS4B01G344200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G084370.1	Barley	cytosol	22.75	94.25
TraesCS5A01G513000.1	Wheat	cytosol	92.37	90.0
TraesCS4D01G339300.1	Wheat	cytosol	92.93	89.45
HORVU4Hr1G084330.1	Barley	cytosol	87.52	83.47
TraesCS2B01G377900.1	Wheat	cytosol	62.83	70.12
EER95529	Sorghum	nucleus	62.27	69.08
OQU93258	Sorghum	cytosol	61.3	62.96
Zm00001d027621_P001	Maize	cytosol	61.16	58.96
TraesCS5B01G338500.1	Wheat	cytosol	39.81	56.05
TraesCS3B01G425600.1	Wheat	cytosol	30.51	53.53
TraesCS1B01G456800.1	Wheat	cytosol	44.11	52.74
TraesCS1B01G164800.1	Wheat	cytosol, nucleus, peroxisome	46.46	52.67
TraesCS5B01G284200.1	Wheat	cytosol	36.48	52.49
TraesCS2B01G515000.1	Wheat	cytosol	36.48	49.81
TraesCS4B01G358100.1	Wheat	plastid	44.24	44.8
TraesCS2B01G382300.1	Wheat	mitochondrion	40.78	42.3
TraesCS6B01G254400.1	Wheat	mitochondrion	41.33	41.97
TraesCS4B01G344100.1	Wheat	mitochondrion	39.53	40.31
TraesCS6B01G413100.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	38.56	37.62
TraesCS5B01G009400.1	Wheat	cytosol	18.59	28.03
TraesCS3B01G577600.1	Wheat	cytosol	19.42	26.72
TraesCS5B01G009600.1	Wheat	cytosol	19.14	26.29
TraesCS5B01G176000.2	Wheat	mitochondrion	16.78	22.96
TraesCS2B01G057300.1	Wheat	peroxisome	23.99	22.47
TraesCS7B01G344600.1	Wheat	mitochondrion	10.12	20.8
TraesCS2B01G026900.1	Wheat	cytosol	17.2	20.7
TraesCS6B01G057500.1	Wheat	cytosol	13.18	18.85
TraesCS7B01G327100.1	Wheat	cytosol, peroxisome, plasma membrane	18.72	18.54
TraesCS5B01G009700.1	Wheat	mitochondrion	21.08	17.7

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	ncoils:Coil	InterPro:IPR001841	InterPro:IPR002035
InterPro:IPR013083	InterPro:IPR036465	PFAM:PF13768	PFAM:PF14624	PFAM:PF17123	PFscan:PS50089
PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF72	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300
SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS4B01G344200	EnsemblPlants:TraesCS4B01G344200.1	InterPro:VWF_A	InterPro:Vwaint_dom	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	TIGR:cd01466	TIGR:cd16448	SEG:seg	InterPro:vWFA_dom_sf	:

Description

No Description!

Coordinates

chr4B:-:637722449..637724803

Molecular Weight (calculated)

77170.1 Da

IEP (calculated)

5.601

GRAVY (calculated)

-0.343

Length

721 amino acids

Sequence
(BLAST)

001: MEGTDQENPC AICLGGMAAG GGQATFTAEC SHTFHFNCIS ASVAHGHLVC PLCNARWREL PLLRPTAPVP QPPTLPRLGR PVPMHAVQPP NEPISSPPLM
101: HGGMPPFPAQ APPPPRGHIM QHHQPPPNVH VVQQQQPPPE PTVVFDDDEQ VEPASRPPAD DTPPATSNGA VVVNTHAEYA VVARDSSSDN FAVLVHVKAP
201: GMADAVAAGS DKPPPRAPLD LVTVLDVSGS MSGHKLALLK QAMRFVIDNL GPDDRLSVVS FSSEARRLTR LTRMSDAGKA LAVSAVESLA ARGGTNIAEG
301: LRTAAKVLDE RRHRNAVSSV VLLSDGQDTY TMMRRRGPSG VQASNYEELV PPSFARTGAD GDWSAPIHTF GFGNDHDAAA MHVIAEATGG TFSFIENEAV
401: IQDAFAQCIG GLLSVVVQEA RIAVSCVHPG VRVVSIKSGR YESRVDEDGR AASVRVGELY ADEERRFLLF LAVPRTEATD SDTTALVKVA FSYRNAATGA
501: EVSVTAEDTV VARPEHAPDT SERSVEVERE RVRVEAAEDI AAARAAAERG EHQEAVEILE NRQRALEQSE AAGDGDPMIM ALGAELQEMR GLVSNRQSYM
601: RSGRAYMLAG MSAHQQQRAT SRQMLEPEEQ QTLMRARTGV RRMIRRVGSS GGGYMAAAPV AEASNEATMS YATPAMRAML LRSRVVRGAS TEQGQQEEPM
701: AGEEDAGSSE PKIQTPKDVN Q

Best Arabidopsis Sequence Match ( AT1G08050.1 )
(BLAST)

001: MENPNNLRES KSHLNLNECL TLPKTLDPSS PSPSDASRSS VDPNRPDSSS SRPGSTPSSS GLRFSKGRCA ICLYEIRKED GKAIFTAECS HSFHFDCITS
101: NVKHGNRICP LCRTQWKQVP LCDVDSVPTF VAQRGFEDDE PLPQGDTQIH SDGHRSDHQA LEIKLFPEVS ALAKPVSRAD FAVLVHLKAE GVSDDARRAR
201: APLDLITVLD VSGSMDGVKM ELMKNAMSFV IQNLGETDRL SVISFSSMAR RLFPLRLMSE TGKQAAMQAV NSLVADGGTN IAEGLKIGAR VIEGRRWKNP
301: VSGMMLLSDG QDNFTFSHAG VRLRTDYESL LPSSCRIPIH TFGFGSDHDA ELMHTISEVS SGTFSFIETE TVIQDAFAQC IGGLLSVVIL EQVVEIECIH
401: EQGLKISSIK AGSYRSRIAP DARTATIDVG DMYAEEERDF LVLLEIPCCD NGSGESESLS LLKVRCVYKD PVTKEIVHVE SGELSIQRPM KLTGKEVVSI
501: EVDRQLNRFL VSQAMSEARV LADGGDLSGA VGILRNRERE LSETPSAQSS DRLCQSLSSE LSALQERMTS RRMYRTSGRA YAFSSMSSHS AQRATARGDS
601: TQGFSPVQAY QTSPMARMVT RSQLLVLESP TKPSPGRGEQ S

Arabidopsis Description

T6D22.13 [Source:UniProtKB/TrEMBL;Acc:Q9LN03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.