Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- plastid 1
- peroxisome 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G045100.1 | Wheat | peroxisome | 94.42 | 95.66 |
| TraesCS2D01G043700.1 | Wheat | peroxisome | 94.68 | 95.54 |
| Os04t0101800-01 | Rice | cytosol, mitochondrion, peroxisome, plastid | 66.49 | 74.31 |
| Zm00001d024940_P001 | Maize | peroxisome | 69.74 | 72.86 |
| Zm00001d004553_P001 | Maize | peroxisome | 70.52 | 72.4 |
| OQU81040 | Sorghum | peroxisome | 65.45 | 70.49 |
| GSMUA_Achr4P20870_001 | Banana | cytosol, mitochondrion, nucleus, peroxisome | 50.39 | 53.01 |
| GSMUA_Achr4P22090_001 | Banana | nucleus | 48.7 | 52.45 |
| GSMUA_Achr7P01890_001 | Banana | mitochondrion | 48.05 | 51.82 |
| GSMUA_Achr5P14740_001 | Banana | mitochondrion | 45.45 | 50.58 |
| VIT_07s0205g00030.t01 | Wine grape | nucleus | 42.6 | 50.0 |
| VIT_18s0001g08100.t01 | Wine grape | plastid | 44.42 | 45.18 |
| PGSC0003DMT400078676 | Potato | plastid | 41.3 | 44.73 |
| Solyc02g091710.2.1 | Tomato | plastid | 41.56 | 44.57 |
| Solyc04g076860.2.1 | Tomato | nucleus | 43.25 | 44.4 |
| KRH45468 | Soybean | cytosol, peroxisome | 23.12 | 44.17 |
| PGSC0003DMT400016355 | Potato | nucleus | 42.6 | 43.5 |
| KRH74431 | Soybean | mitochondrion | 37.92 | 42.94 |
| KRH39527 | Soybean | extracellular, golgi | 30.13 | 42.88 |
| CDY28148 | Canola | plastid | 37.14 | 42.12 |
| KRH75634 | Soybean | nucleus | 35.06 | 41.67 |
| AT5G49665.1 | Thale cress | plastid | 39.87 | 41.49 |
| KRH72527 | Soybean | nucleus | 34.94 | 41.32 |
| Bra017859.1-P | Field mustard | plastid | 33.51 | 40.82 |
| CDY25618 | Canola | nucleus, peroxisome, plastid | 35.06 | 40.79 |
| Bra030218.1-P | Field mustard | nucleus | 35.58 | 40.77 |
| Bra040498.1-P | Field mustard | plastid | 38.05 | 40.25 |
| CDX89500 | Canola | cytosol, peroxisome, plastid | 34.94 | 39.97 |
| KRH16916 | Soybean | nucleus | 34.94 | 39.91 |
| CDY31616 | Canola | nucleus | 35.58 | 39.88 |
| CDX72660 | Canola | cytosol, nucleus, peroxisome, plastid | 35.32 | 39.71 |
| CDY45010 | Canola | mitochondrion, peroxisome | 37.4 | 39.56 |
| AT2G22680.1 | Thale cress | cytosol, peroxisome, plastid | 35.06 | 39.53 |
| Bra024408.1-P | Field mustard | plastid | 35.32 | 38.42 |
| CDY08765 | Canola | plastid | 35.19 | 38.28 |
| Bra031849.1-P | Field mustard | plastid | 34.42 | 37.43 |
| AT4G37890.1 | Thale cress | nucleus | 35.58 | 37.08 |
| CDY45614 | Canola | plastid | 34.16 | 36.94 |
| CDY52535 | Canola | plastid | 34.03 | 36.9 |
| AT5G65683.1 | Thale cress | peroxisome, plastid | 33.25 | 35.7 |
| CDY37838 | Canola | plastid | 21.95 | 33.8 |
| KRH45469 | Soybean | nucleus | 7.4 | 32.2 |
| TraesCS5B01G338500.1 | Wheat | cytosol | 18.57 | 27.93 |
| TraesCS5B01G284200.1 | Wheat | cytosol | 17.53 | 26.95 |
| TraesCS2B01G377900.1 | Wheat | cytosol | 22.21 | 26.47 |
| TraesCS6B01G254400.1 | Wheat | mitochondrion | 23.77 | 25.77 |
| TraesCS2B01G382300.1 | Wheat | mitochondrion | 23.12 | 25.61 |
| TraesCS1B01G164800.1 | Wheat | cytosol, nucleus, peroxisome | 20.78 | 25.16 |
| TraesCS1B01G456800.1 | Wheat | cytosol | 19.61 | 25.04 |
| TraesCS6B01G413100.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 23.9 | 24.9 |
| TraesCS2B01G515000.1 | Wheat | cytosol | 16.62 | 24.24 |
| TraesCS4B01G344100.1 | Wheat | mitochondrion | 22.08 | 24.05 |
| TraesCS4B01G344200.1 | Wheat | cytosol | 22.47 | 23.99 |
| TraesCS5B01G176000.2 | Wheat | mitochondrion | 16.1 | 23.53 |
| TraesCS4B01G358100.1 | Wheat | plastid | 21.17 | 22.89 |
| TraesCS5B01G009400.1 | Wheat | cytosol | 12.34 | 19.87 |
| TraesCS3B01G577600.1 | Wheat | cytosol | 13.25 | 19.47 |
| TraesCS3B01G425600.1 | Wheat | cytosol | 10.39 | 19.46 |
| TraesCS5B01G009600.1 | Wheat | cytosol | 12.47 | 18.29 |
| TraesCS2B01G026900.1 | Wheat | cytosol | 12.08 | 15.53 |
| TraesCS6B01G057500.1 | Wheat | cytosol | 10.13 | 15.48 |
| TraesCS7B01G344600.1 | Wheat | mitochondrion | 6.36 | 13.96 |
| TraesCS7B01G327100.1 | Wheat | cytosol, peroxisome, plasma membrane | 12.6 | 13.32 |
| TraesCS5B01G009700.1 | Wheat | mitochondrion | 11.3 | 10.13 |
Protein Annotations
| MapMan:26.3.1.6 | Gene3D:3.30.40.10 | Gene3D:3.40.50.410 | InterPro:IPR001841 | InterPro:IPR002035 | InterPro:IPR013083 |
| InterPro:IPR036465 | PFAM:PF13519 | PFAM:PF17123 | PFscan:PS50089 | PFscan:PS50234 | PANTHER:PTHR10579 |
| PANTHER:PTHR10579:SF55 | SMART:SM00184 | SMART:SM00327 | SUPFAM:SSF53300 | SUPFAM:SSF57850 | EnsemblPlantsGene:TraesCS2B01G057300 |
| EnsemblPlants:TraesCS2B01G057300.1 | InterPro:VWF_A | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | InterPro:vWFA_dom_sf |
Description
No Description!
Coordinates
chr2B:-:27896023..27899511
Molecular Weight (calculated)
80937.2 Da
IEP (calculated)
10.149
GRAVY (calculated)
-0.399
Length
770 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTGWRRALC TSVSRDDSDG GSAKRRPPPA RGDAPATPRK LAFFSGMGGG GGGSNPPAPA LRCRTRPTAE PESVAPMTPP QPASAPVSAR KRVPLLQAIS
101: APSSPRSPSR FALFKASILP TKARCGVCTR GVKNGGGAAV FTAECSHSFH FPCIAAHARA AASGALCCPV CSAPWRQAPF LASLRLHLDA DGSPHRKHRT
201: SDDSRKTAPV TAKAAGVPKV YDDDEPLLAP KSAANGSGFN PIPEADEDGD EGEGEGEEAG REGEFRGFFP HPPRVRTGLA VTVAPEAALV SSGRRHGKYV
301: VVVKVKAPAL RSSASRRAPI DLVTVLDVSQ GMMGEKLQML KRGMRLVIAS LGPADRLSLV AFSGAAKRLM PLRRMSRQGQ RSARQIVDRL VVCAAAQGQE
401: QQAQGACAGD ALRKATKVLE DRRDRNPVAT VMLLSDTQQQ QQQQDARKHG DHHHALRRPQ PAPAAAATRF THVEIPIAGP GPADDAPARS PLAPKQEEQL
501: ESSAPAEHAF AKCLGGLVSV VMQEVHLELA FPTGEITAVY SCGAGQQAVA LAGGAGGSGG SALSVRLGEM YAEEERELLV ELRAPLGAHP HALSVRCAYR
601: DPASQETVRG AEQPLLLPPL HDGGGGGSST SSSQQRLHDL FVATRAVAES RRLAELGDFS TATHLLSSAR RLVLQSPPTQ QQQDLLGGLD TELGDMRWRR
701: GQQQPPTPTS RSATPSGTPR ASSGGGGGGG SEPLTPTSAW RAAEQLAKVA IMRKSMNRVS DLHGFENARF
101: APSSPRSPSR FALFKASILP TKARCGVCTR GVKNGGGAAV FTAECSHSFH FPCIAAHARA AASGALCCPV CSAPWRQAPF LASLRLHLDA DGSPHRKHRT
201: SDDSRKTAPV TAKAAGVPKV YDDDEPLLAP KSAANGSGFN PIPEADEDGD EGEGEGEEAG REGEFRGFFP HPPRVRTGLA VTVAPEAALV SSGRRHGKYV
301: VVVKVKAPAL RSSASRRAPI DLVTVLDVSQ GMMGEKLQML KRGMRLVIAS LGPADRLSLV AFSGAAKRLM PLRRMSRQGQ RSARQIVDRL VVCAAAQGQE
401: QQAQGACAGD ALRKATKVLE DRRDRNPVAT VMLLSDTQQQ QQQQDARKHG DHHHALRRPQ PAPAAAATRF THVEIPIAGP GPADDAPARS PLAPKQEEQL
501: ESSAPAEHAF AKCLGGLVSV VMQEVHLELA FPTGEITAVY SCGAGQQAVA LAGGAGGSGG SALSVRLGEM YAEEERELLV ELRAPLGAHP HALSVRCAYR
601: DPASQETVRG AEQPLLLPPL HDGGGGGSST SSSQQRLHDL FVATRAVAES RRLAELGDFS TATHLLSSAR RLVLQSPPTQ QQQDLLGGLD TELGDMRWRR
701: GQQQPPTPTS RSATPSGTPR ASSGGGGGGG SEPLTPTSAW RAAEQLAKVA IMRKSMNRVS DLHGFENARF
001: MGTGWRRAFC TTAPRNSDAA APDLDKQRTG YNLTPSPSPR SCVKLAFLSG GSNPSTPRST SSPSLRCRTA DAQTPTAEQT STPRSATKSP RLSLAAISNP
101: SSPRSPLKLS LFRNSFKFRS TCGICLNSVK TGQGTAKYTA ECSHAFHFPC IADYVRKQGK LVCPVCNSIW KDASLLVPHK NATESPLDDS VSVIQEKRVV
201: VTSSPRAKPR PKQSDYSRFY DDDEPLLSPR FVTIPEADEN CGGEEEDDVP QFKGFVVDPN PSFAVKTNEI PVNGRDFGNV QVSLLPEAAV VSVGCGYETR
301: AVALRVKAPP PLTARGGVGR RLLDPSQRAP VDLVVVVDVG GTMNGAKLQM VKRAMRLVIS SLGSADRLSI VAVVMTVPKR LLPLKRMTEH GKRSAGAVVD
401: GLLCGQGSNT SEALKKASRV LEDRRERNPV ASIVLLTDGQ GQLSKVHTNQ RSTITNVGST RFAHIEIPVT EHGFGESGGC SNAPAEEAFA KCIGGLLSVV
501: VQDLRIQIRV GSGSGPCEIS AIYLCNGRPT LVSSGSGSVR LGDLYAGEER ELLVELRVPS TATRAYQILS VRGLFKDPST QEVVYGRDQS LRVPQAVRSS
601: SSPRIERLRS LFIATRAVAE SRRLVEYGEC TSAYHLLTSA RALLGQSGTV EAAEYIKVVE AELVEVQWRG QQLMEYQSQH QQQHNQRRRG SERETTTTMT
701: LMDENGEPLT PASAWRAAEK LAKLAMMKKS DLHGFENARF
101: SSPRSPLKLS LFRNSFKFRS TCGICLNSVK TGQGTAKYTA ECSHAFHFPC IADYVRKQGK LVCPVCNSIW KDASLLVPHK NATESPLDDS VSVIQEKRVV
201: VTSSPRAKPR PKQSDYSRFY DDDEPLLSPR FVTIPEADEN CGGEEEDDVP QFKGFVVDPN PSFAVKTNEI PVNGRDFGNV QVSLLPEAAV VSVGCGYETR
301: AVALRVKAPP PLTARGGVGR RLLDPSQRAP VDLVVVVDVG GTMNGAKLQM VKRAMRLVIS SLGSADRLSI VAVVMTVPKR LLPLKRMTEH GKRSAGAVVD
401: GLLCGQGSNT SEALKKASRV LEDRRERNPV ASIVLLTDGQ GQLSKVHTNQ RSTITNVGST RFAHIEIPVT EHGFGESGGC SNAPAEEAFA KCIGGLLSVV
501: VQDLRIQIRV GSGSGPCEIS AIYLCNGRPT LVSSGSGSVR LGDLYAGEER ELLVELRVPS TATRAYQILS VRGLFKDPST QEVVYGRDQS LRVPQAVRSS
601: SSPRIERLRS LFIATRAVAE SRRLVEYGEC TSAYHLLTSA RALLGQSGTV EAAEYIKVVE AELVEVQWRG QQLMEYQSQH QQQHNQRRRG SERETTTTMT
701: LMDENGEPLT PASAWRAAEK LAKLAMMKKS DLHGFENARF
Arabidopsis Description
WAV3E3 ubiquitin-protein ligase WAV3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTA6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.