CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
peroxisome 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, nucleus, peroxisome, plastid
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25618	Canola	nucleus, peroxisome, plastid	94.95	96.53
AT2G22680.1	Thale cress	cytosol, peroxisome, plastid	79.2	78.04
CDX72660	Canola	cytosol, nucleus, peroxisome, plastid	63.3	62.19
CDY31616	Canola	nucleus	62.85	61.57
KRH74431	Soybean	mitochondrion	48.29	47.79
VIT_07s0205g00030.t01	Wine grape	nucleus	46.51	47.71
KRH45468	Soybean	cytosol, peroxisome	28.23	47.15
KRH39527	Soybean	extracellular, golgi	37.3	46.4
PGSC0003DMT400078676	Potato	plastid	48.59	45.99
Solyc02g091710.2.1	Tomato	plastid	48.44	45.4
CDY52535	Canola	plastid	47.4	44.93
CDY08765	Canola	plastid	46.95	44.63
CDY45614	Canola	plastid	46.21	43.68
KRH75634	Soybean	nucleus	41.9	43.52
CDY28148	Canola	plastid	41.01	40.65
CDY37838	Canola	plastid	30.16	40.6
CDY45010	Canola	mitochondrion, peroxisome	41.9	38.74
Os04t0101800-01	Rice	cytosol, mitochondrion, peroxisome, plastid	38.78	37.88
GSMUA_Achr5P14740_001	Banana	mitochondrion	37.59	36.56
Zm00001d024940_P001	Maize	peroxisome	39.52	36.09
TraesCS2A01G045100.1	Wheat	peroxisome	40.12	35.53
GSMUA_Achr7P01890_001	Banana	mitochondrion	37.59	35.43
TraesCS2D01G043700.1	Wheat	peroxisome	39.97	35.26
Zm00001d004553_P001	Maize	peroxisome	39.08	35.07
GSMUA_Achr4P20870_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	38.04	34.97
TraesCS2B01G057300.1	Wheat	peroxisome	39.97	34.94
GSMUA_Achr4P22090_001	Banana	nucleus	36.7	34.55
KRH45469	Soybean	nucleus	8.77	33.33
OQU81040	Sorghum	peroxisome	34.92	32.87
CDY72156	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	21.55	26.9
CDY67781	Canola	cytosol	20.95	26.65
CDY31517	Canola	extracellular, mitochondrion, plastid	23.63	26.59
CDY52708	Canola	extracellular, mitochondrion, plastid	23.33	26.08
CDY32819	Canola	cytosol	21.69	24.17
CDX91506	Canola	mitochondrion	21.55	23.85
CDX74871	Canola	mitochondrion	21.55	23.77
CDX93597	Canola	cytosol	22.59	23.64
CDY17702	Canola	mitochondrion	13.37	23.38
CDX95099	Canola	cytosol	18.43	22.06
CDX77800	Canola	nucleus	16.34	19.37
CDX93598	Canola	endoplasmic reticulum, golgi, mitochondrion, vacuole	0.3	0.52

Protein Annotations

MapMan:26.3.1.6	Gene3D:3.30.40.10	Gene3D:3.40.50.410	GO:A0A078DJY4	EnsemblPlants:CDX89500	ProteinID:CDX89500
ProteinID:CDX89500.1	ncoils:Coil	EnsemblPlantsGene:GSBRNA2T00149774001	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083
InterPro:IPR036465	PFAM:PF13519	PFAM:PF17123	PFscan:PS50089	PANTHER:PTHR10579	PANTHER:PTHR10579:SF59
SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0004EDB4C6	InterPro:VWF_A
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

BnaC04g35190D

Coordinates

chrLK031859:+:475994..478015

Molecular Weight (calculated)

73206.2 Da

IEP (calculated)

10.256

GRAVY (calculated)

-0.289

Length

673 amino acids

Sequence
(BLAST)

001: MISGWRRAFC TSLPKERHDD DSNGVLDSPE DQRFRHKPSY KFGFFSTPTT PRSVSGTYSL RCRTSTATAV AVATATPSPS LPSTPKLTCR TTTAESTPAT
101: TPTRNSSLVS SPASFALLKS KLRFNKAKSS NKCGICSQSV KPGQGTAIFT AECSHTFHFP CVTSRAAADH NRLVTCPVCG SSLLPETRNY GKPGSQTGQE
201: TSRLRVYNDD EPLISSPMSP AGFHTILESD ENEDGEFTGF SVSTPSPLTA KLLTDDSLRN VEVKLSPESA IVAAVKGYET YSVVMKVKSP PFTTARRLPV
301: DLVIVLDLAG RLESLKRTMK LLISNLRETD RLSIVAFSSS SKRLLPLRRM TANGRRSARR IVDIISVSGA GVACNGGGMS ANDALKKAVK VLEDRRQQNP
401: FAAIFVLTDR QAHQAQLAHS KIPVVWLGAW DHAVSEDAFA RSINGYLSLS VQDLGLSLGL VSGSGQGEIT AVYSLSGRPA WLGTGSVRLG DMYAGEERAL
501: LVEIKAPVSS SITSRSHRIL TVRSRYVDPT TQEIRNPEDR ALLIPYPVTV RSSSNPNIAR LRNFHVSSRA VAESRRLIER NNYSGAERLL TSARALLVQY
601: GLNSSDMCLR GLDAELADLN GVRGRQLTSS LESLEPLTPT SAWKAAERLA KVAKMRKHMN RVSDLHGFEN ARF

Best Arabidopsis Sequence Match ( AT2G22680.1 )
(BLAST)

001: MLNGWRRAFC TSIPKETNQN DVDDDGLVGL RHKSTSRFGF FSTPSTPRSD SGTGTYSLRC RTSTATAVST TSSLPGTPKL KCKTTTTGET TPRNRSLVSL
101: LTPSSSSISP ASFTLLKSKL RFKQSSSNKC GICLQSVKSG QGTAIFTAEC SHTFHFPCVT SRAAANHNRL ASCPVCGSSL LPEIRNYAKP ESQIKPEIKN
201: KSLRVYNDDE ALISSPISPA GFHTILESDE NEDCEEFTGF SVNTPSPLTA KLLTDRNVDV KLSPESAIVA SGKGYETYSV VMKVKSPPFP TARGFARRVP
301: VDLVAVLDVS GRNSGGKLEM LKQTMRIVLS NLREMDRLSI IAFSSSSKRL SPLRRMTANG RRSARRIVDI ITVPGSVSGV GIDFSGEGMS VNDALKKAVK
401: VLDDRRQKNP FTAVFVLTDR QAHQVAQLAH SRIPIHTIWL SHAIPEDAFA RTINGYLSLS VQDLGLQLGI VSGLGQGEIT SVYSLSGRPA WLGTGSIRLG
501: DMYAEEERAL LVEIKSPVNN SLTGSRSHKI MTVRSRYVDP TTQELRNPED RALLIPTPLT VRSSSNPNIS RLRNLHVSTR AVAESRRLIE RNHYSGAHRL
601: LTSARALLVQ HGLSSSDACI RGLDAEIADL NSVKGRHVAA SESLESLTPT SAWKAAERLA KVAMVRKHMN RVSDLHGFEN ARF

Arabidopsis Description

WAVH1E3 ubiquitin-protein ligase WAVH1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ46]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.