CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, extracellular

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 4
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion, plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31517	Canola	extracellular, mitochondrion, plastid	95.02	95.65
Bra002456.1-P	Field mustard	mitochondrion, plastid	97.84	84.14
AT5G60710.1	Thale cress	extracellular, mitochondrion, plastid	87.04	74.43
CDX91506	Canola	mitochondrion	56.81	56.25
CDX74871	Canola	mitochondrion	56.98	56.23
VIT_06s0004g02630.t01	Wine grape	mitochondrion, nucleus	67.77	55.97
Solyc11g069600.1.1	Tomato	plastid	63.95	52.52
PGSC0003DMT400020896	Potato	mitochondrion, plastid	63.95	52.52
GSMUA_Achr5P20480_001	Banana	mitochondrion	53.16	50.47
GSMUA_Achr11P...	Banana	mitochondrion	44.52	49.81
GSMUA_Achr11P...	Banana	mitochondrion	51.49	49.6
CDY72156	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	44.19	49.35
GSMUA_Achr1P03470_001	Banana	mitochondrion, plastid	52.33	49.22
CDY67781	Canola	cytosol	43.02	48.96
CDX95099	Canola	cytosol	44.85	48.04
CDY32819	Canola	cytosol	48.17	48.01
Zm00001d017247_P002	Maize	mitochondrion	52.33	45.26
Os02t0619600-01	Rice	mitochondrion	53.16	45.13
Zm00001d051119_P001	Maize	nucleus	51.16	44.77
HORVU6Hr1G057680.2	Barley	cytosol, mitochondrion, nucleus	52.49	44.38
OQU85324	Sorghum	mitochondrion	51.83	44.38
CDX93597	Canola	cytosol	47.34	44.32
TraesCS2B01G382300.1	Wheat	mitochondrion	51.0	44.17
TraesCS2D01G361900.1	Wheat	mitochondrion	50.66	44.08
Os04t0508800-01	Rice	plasma membrane	51.83	44.07
TraesCS6D01G207700.2	Wheat	mitochondrion	51.83	43.94
TraesCS6A01G227300.1	Wheat	mitochondrion	51.83	43.88
TraesCS2A01G364100.2	Wheat	cytosol, mitochondrion	50.5	43.68
TraesCS6B01G254400.1	Wheat	mitochondrion	51.49	43.66
HORVU2Hr1G088110.4	Barley	cytosol, mitochondrion	50.0	43.0
Zm00001d027622_P001	Maize	mitochondrion	48.34	42.05
TraesCS5A01G512800.2	Wheat	mitochondrion	49.0	41.73
OQU81931	Sorghum	mitochondrion	48.17	41.61
TraesCS4B01G344100.1	Wheat	mitochondrion	48.84	41.58
TraesCS4D01G339200.1	Wheat	mitochondrion	48.51	41.3
HORVU4Hr1G084340.1	Barley	mitochondrion	48.34	41.16
OQU93256	Sorghum	mitochondrion	47.51	40.97
Os03t0142500-01	Rice	plasma membrane	46.84	40.63
Zm00001d025825_P001	Maize	mitochondrion	47.34	40.48
GSMUA_Achr2P11780_001	Banana	golgi	31.73	40.47
CDY28148	Canola	plastid	28.74	25.48
CDY25618	Canola	nucleus, peroxisome, plastid	26.41	24.02
CDY45010	Canola	mitochondrion, peroxisome	28.74	23.76
CDX89500	Canola	cytosol, peroxisome, plastid	26.08	23.33
CDX72660	Canola	cytosol, nucleus, peroxisome, plastid	26.41	23.21
CDY08765	Canola	plastid	27.08	23.02
CDY45614	Canola	plastid	26.91	22.75
CDY31616	Canola	nucleus	25.75	22.56
CDY52535	Canola	plastid	25.91	21.97
CDY37838	Canola	plastid	16.61	20.0
CDY17702	Canola	mitochondrion	12.29	19.22
CDX77800	Canola	nucleus	16.94	17.96
CDX93598	Canola	endoplasmic reticulum, golgi, mitochondrion, vacuole	1.16	1.81

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	GO:A0A078IUL3	UniProt:A0A078IUL3	EnsemblPlants:CDY52708
ProteinID:CDY52708	ProteinID:CDY52708.1	EnsemblPlantsGene:GSBRNA2T00007632001	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083
InterPro:IPR036465	PFAM:PF00092	PFAM:PF13639	PFAM:PF14624	PFscan:PS50089	PANTHER:PTHR10579
PANTHER:PTHR10579:SF97	SMART:SM00184	SUPFAM:SSF53300	SUPFAM:SSF57850	SignalP:SignalP-noTM	UniParc:UPI0004EE70E7
InterPro:VWF_A	InterPro:Vwaint_dom	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf

Description

BnaC09g54360DBnaC09g54360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IUL3]

Coordinates

chrLK033120:-:59480..64027

Molecular Weight (calculated)

64708.5 Da

IEP (calculated)

8.633

GRAVY (calculated)

-0.133

Length

602 amino acids

Sequence
(BLAST)

001: MGSKWRKAKL ALGLNLCLYV PKTLEESSSL SRRSNDAVSL SPVTVPRPTT PTPSSSGLRL PRSISISSSK KTCAICLTAM KAGQGHAIFT AECSHSFHFH
101: CITTNVQHGN QICPVCRAKW NESKPIPAVF NDDEALELQD RPAESTKPGG VSGKLEVKTY PEISEVVRSV SFKDFSVLIN LKAPPVSSSS SSSSSRAPVD
201: LVTVLDVSGS MAGTKLALLK RAMGFALQAV NSLVSNGGTN IAEGLMKGAK VLIERRFKNS VSSIVLLSDG QDTYTMTSPT VNRIPVHAFG FGADHDASLM
301: HSIAENSGGT FSFIESETVI QDAFAQCIGG LLSVMVQELR VKIECVHPML KIGSVKAGSY RFDSRTGSIE VGDLYAEEER NFLVNLDVPV LDGVLDTMSL
401: LKVGCVYRDP VTKETVDLSN SGEVKILRPV LEGRPVVSVE VDRQKIRLRA AEAISEARVL AERGDLTGAV SVLETCRGVL SETVSGRAGD ALCVSLCAEL
501: KETQERMASR QVYESSGRAY VLAGLSSHSW QRATARGDMS DTTTMSYQTQ SMVDMVNLSQ TMTFGCPRAS SNGNSSSNPN PSPSARRKLR QALTFPARPR
601: AR

Best Arabidopsis Sequence Match ( AT5G60710.1 )
(BLAST)

001: MGSKWRKAKV ALGLNLCLYV PKTLEDSSPP RRSDDAVSLS PVIVQRPSTP TPSSSGLRLP RSMSKSSSKK TCAICLTAMK AGQGHAIFTA ECSHSFHFQC
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR

Arabidopsis Description

Retroelement pol polyprotein-like [Source:UniProtKB/TrEMBL;Acc:Q9FF49]
SUBAcon: [mitochondrion,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.