Factsheet for GSMUA_Achr2P11780_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
nucleus 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P20480_001	Banana	mitochondrion	49.79	37.07
GSMUA_Achr1P03470_001	Banana	mitochondrion, plastid	49.36	36.41
GSMUA_Achr11P...	Banana	mitochondrion	48.09	36.32
GSMUA_Achr11P...	Banana	mitochondrion	38.14	33.46
CDX74871	Canola	mitochondrion	41.74	32.3
CDY31517	Canola	extracellular, mitochondrion, plastid	40.68	32.11
CDX91506	Canola	mitochondrion	41.31	32.07
CDY52708	Canola	extracellular, mitochondrion, plastid	40.47	31.73
VIT_06s0004g02630.t01	Wine grape	mitochondrion, nucleus	47.67	30.86
Solyc05g056140.2.1	Tomato	nucleus	47.46	30.77
VIT_13s0019g04440.t01	Wine grape	endoplasmic reticulum	46.19	30.7
PGSC0003DMT400059986	Potato	nucleus	47.25	30.67
GSMUA_Achr6P36520_001	Banana	plastid	44.28	29.9
Zm00001d017247_P002	Maize	mitochondrion	43.86	29.74
OQU85324	Sorghum	mitochondrion	44.28	29.73
Bra005066.1-P	Field mustard	mitochondrion	41.31	29.73
Zm00001d051119_P001	Maize	nucleus	43.22	29.65
Zm00001d027622_P001	Maize	mitochondrion	42.8	29.19
OQU93256	Sorghum	mitochondrion	43.01	29.08
HORVU6Hr1G057680.2	Barley	cytosol, mitochondrion, nucleus	43.86	29.07
AT2G38970.1	Thale cress	mitochondrion	42.58	29.05
TraesCS6B01G254400.1	Wheat	mitochondrion	43.64	29.01
TraesCS6D01G207700.2	Wheat	mitochondrion	43.64	29.01
Bra020234.1-P	Field mustard	mitochondrion	42.58	28.92
Os02t0619600-01	Rice	mitochondrion	43.43	28.91
TraesCS6A01G227300.1	Wheat	mitochondrion	43.43	28.83
TraesCS2D01G361900.1	Wheat	mitochondrion	41.95	28.61
AT5G60710.1	Thale cress	extracellular, mitochondrion, plastid	42.58	28.55
Solyc11g069600.1.1	Tomato	plastid	44.28	28.51
PGSC0003DMT400020896	Potato	mitochondrion, plastid	44.28	28.51
TraesCS2A01G364100.2	Wheat	cytosol, mitochondrion	41.95	28.45
TraesCS2B01G382300.1	Wheat	mitochondrion	41.74	28.35
Bra002456.1-P	Field mustard	mitochondrion, plastid	41.95	28.29
HORVU4Hr1G084340.1	Barley	mitochondrion	42.16	28.15
CDX95099	Canola	cytosol	33.47	28.11
Os04t0508800-01	Rice	plasma membrane	42.16	28.11
Os03t0142500-01	Rice	plasma membrane	41.31	28.1
TraesCS4D01G339200.1	Wheat	mitochondrion	41.95	28.01
TraesCS5A01G512800.2	Wheat	mitochondrion	41.95	28.01
HORVU2Hr1G088110.4	Barley	cytosol, mitochondrion	41.53	28.0
TraesCS4B01G344100.1	Wheat	mitochondrion	41.53	27.72
AT3G54780.4	Thale cress	endoplasmic reticulum, extracellular, plastid	39.19	27.13
OQU81931	Sorghum	mitochondrion	39.62	26.83
CDY72156	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	30.51	26.72
Zm00001d025825_P001	Maize	mitochondrion	39.83	26.7
CDY67781	Canola	cytosol	29.87	26.65
CDY32819	Canola	cytosol	31.99	25.0
AT1G08050.1	Thale cress	plastid	33.9	24.96
Bra030712.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	32.2	24.88
CDX93597	Canola	cytosol	33.69	24.73
GSMUA_Achr4P06340_001	Banana	mitochondrion	8.26	20.31
GSMUA_Achr7P01890_001	Banana	mitochondrion	23.31	15.41
GSMUA_Achr4P22090_001	Banana	nucleus	23.31	15.38
GSMUA_Achr5P14740_001	Banana	mitochondrion	20.13	13.73
GSMUA_Achr9P22360_001	Banana	plastid	11.44	13.33
GSMUA_Achr4P20870_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	20.55	13.25
Bra018663.1-P	Field mustard	nucleus	34.32	12.28

Protein Annotations

EnsemblPlants:GSMUA_Achr2P11780_001	EnsemblPlants:GSMUA_Achr2T11780_001	EnsemblPlantsGene:GSMUA_Achr2G11780_001	Gene3D:3.30.40.10	Gene3D:3.40.50.410	InterPro:IPR001841
InterPro:IPR013083	InterPro:IPR036465	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:vWFA_dom_sf	ncoils:Coil
PANTHER:PTHR10579	PANTHER:PTHR10579:SF97	PFAM:PF17123	PFscan:PS50089	SignalP:SignalP-TM	SMART:SM00184
SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI000294E28E	UniProt:M0S769	MapMan:35.1	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G11780_001]

Coordinates

chr2:-:14450055..14454212

Molecular Weight (calculated)

53036.0 Da

IEP (calculated)

8.437

GRAVY (calculated)

-0.120

Length

472 amino acids

Sequence
(BLAST)

001: MRSSWRKAKR ALGMSLCVFV PTAADDDDDG TSWRRCFGPL PLIFLSSIVS FQWDNLLWSN AVYLSDILLI NFRFQKTCSI CLGTMKAGNG HALFTAECSH
101: TFHFPCIVFN VKYGNYVCPV CRARWKEIPF QAPLSSEHPR IRTRVDTVNW SQEDDHMMVL RMLHRADSSN RQHHQHGCAK TTYPEFLAIP QSASKENFTV
201: LIHLKAPHAG TEYSTKLALL KHQALEAVNS LVSSGGTNIA EGLRKGAKVT EDRKEHNPVC SIILLSDGQD TYTLTSNHDS TAMHSISEIS GGTFSFIESE
301: VVIQDAFVQC IGGLLSVVMK EMLMMVQCVD PGVQLAPIKS GSYANRLTDD SRSGTIIVGD LYADEAKLSM SHLPTKMLCC LRCDVPIETW SAKKPLIWRM
401: KGTVSRLLRQ WKMQEPLLSV VLSPRQRQYS MSRGGDYVKT SLDSLMTNFA YCNLWKNVGL YSFFSSINIR NF

Best Arabidopsis Sequence Match ( AT2G38970.1 )
(BLAST)

001: MGTRWRRMKL ALGLNLCTYL PRTLEESPTP LNSTERLSDV ALLSPLNWPM TPTPSSHGLK LSRNSSKSSK TCSICLNKMK EGGGHALFTA ECSHSFHFHC
101: IASNVKHGNQ VCPVCRAKWK EIPMQHPSFD LPYLFARSYN NDAAISLVHR LPRSRGVMNQ GRGLAPEPSM FDDDERLEQQ LVFSGKSYSD ALENNHPVRM
201: MDLKIYPEVS AVPRADSREK FDVLVHLRAA AMVTGNANSL NNQISRYPRA PVDLVTVLDI SGSMAGTKLA LLKRAMGFVI QNLGSNDRLS VIAFSSTARR
301: LFPLTKMSDA GRQRALQAVN SVVANGGTNI AEGLRKGVKV MEDRRDKNPV ASIILLSDGR DTYTMNQADP NYKLLLPLSM HGCESKRFQI PVHSFGFGSD
401: HDASLMHSVS ETSGGTFSFI ESESVIQDAL AQCIGGLLSV AVQELRLEIE GMCSDVHLSS IKAGSYQSLV SGDGRSGCVD IGDLYADEER DFLISVNIPP
501: QKDGNETPLL KMRCVYKDLL TKEIVTLQSH MLKIQRPETV GQEVVVSIEV DRQRNRFLAA EAMVKARALA EREDLAAGVT AIQNFRVALA ETVSAKSGDG
601: FCVALDRELK EMQERMASRH VYEVSGRAYI LSGLSSHSWQ RATSRGESGD GSSFVQAYYQ TPSMVEMLHR SQATSHHHRL IQPLFASQPK PR

Arabidopsis Description

Zinc finger (C3HC4-type RING finger) family protein [Source:UniProtKB/TrEMBL;Acc:F4IU12]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.