Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, extracellular
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G38970.1 | Thale cress | mitochondrion | 69.94 | 68.93 |
| VIT_13s0019g04440.t01 | Wine grape | endoplasmic reticulum | 61.0 | 58.59 |
| PGSC0003DMT400059986 | Potato | nucleus | 59.68 | 55.98 |
| Solyc05g056140.2.1 | Tomato | nucleus | 59.24 | 55.49 |
| GSMUA_Achr5P20480_001 | Banana | mitochondrion | 46.63 | 50.16 |
| AT5G60710.1 | Thale cress | extracellular, mitochondrion, plastid | 50.88 | 49.29 |
| GSMUA_Achr11P... | Banana | mitochondrion | 45.16 | 49.28 |
| GSMUA_Achr11P... | Banana | mitochondrion | 37.24 | 47.21 |
| GSMUA_Achr1P03470_001 | Banana | mitochondrion, plastid | 44.28 | 47.19 |
| Zm00001d017247_P002 | Maize | mitochondrion | 46.48 | 45.55 |
| Zm00001d051119_P001 | Maize | nucleus | 45.6 | 45.2 |
| TraesCS2B01G382300.1 | Wheat | mitochondrion | 45.89 | 45.04 |
| TraesCS2D01G361900.1 | Wheat | mitochondrion | 45.6 | 44.94 |
| OQU85324 | Sorghum | mitochondrion | 46.19 | 44.81 |
| TraesCS6D01G207700.2 | Wheat | mitochondrion | 46.48 | 44.65 |
| Os02t0619600-01 | Rice | mitochondrion | 46.33 | 44.57 |
| TraesCS2A01G364100.2 | Wheat | cytosol, mitochondrion | 45.45 | 44.54 |
| TraesCS6B01G254400.1 | Wheat | mitochondrion | 46.33 | 44.51 |
| HORVU6Hr1G057680.2 | Barley | cytosol, mitochondrion, nucleus | 46.33 | 44.38 |
| TraesCS6A01G227300.1 | Wheat | mitochondrion | 46.19 | 44.3 |
| HORVU2Hr1G088110.4 | Barley | cytosol, mitochondrion | 45.16 | 44.0 |
| AT1G08050.1 | Thale cress | plastid | 41.2 | 43.84 |
| Os04t0508800-01 | Rice | plasma membrane | 45.31 | 43.64 |
| Zm00001d027622_P001 | Maize | mitochondrion | 43.7 | 43.06 |
| OQU81931 | Sorghum | mitochondrion | 43.7 | 42.75 |
| Zm00001d025825_P001 | Maize | mitochondrion | 43.99 | 42.61 |
| OQU93256 | Sorghum | mitochondrion | 43.55 | 42.55 |
| TraesCS4B01G344100.1 | Wheat | mitochondrion | 43.7 | 42.15 |
| Os03t0142500-01 | Rice | plasma membrane | 42.67 | 41.93 |
| TraesCS5A01G512800.2 | Wheat | mitochondrion | 43.26 | 41.73 |
| TraesCS4D01G339200.1 | Wheat | mitochondrion | 42.96 | 41.44 |
| HORVU4Hr1G084340.1 | Barley | mitochondrion | 42.82 | 41.3 |
| GSMUA_Achr2P11780_001 | Banana | golgi | 27.13 | 39.19 |
| AT5G49665.1 | Thale cress | plastid | 26.69 | 24.59 |
| AT2G22680.1 | Thale cress | cytosol, peroxisome, plastid | 23.46 | 23.43 |
| AT5G65683.1 | Thale cress | peroxisome, plastid | 23.61 | 22.45 |
| AT4G37890.1 | Thale cress | nucleus | 24.05 | 22.19 |
Protein Annotations
| Gene3D:3.30.40.10 | Gene3D:3.40.50.410 | MapMan:35.1 | EntrezGene:824643 | UniProt:A0A1I9LN98 | ProteinID:ANM64056.1 |
| ArrayExpress:AT3G54780 | EnsemblPlantsGene:AT3G54780 | RefSeq:AT3G54780 | TAIR:AT3G54780 | RefSeq:AT3G54780-TAIR-G | EnsemblPlants:AT3G54780.4 |
| Unigene:At.48768 | InterPro:IPR001841 | InterPro:IPR002035 | InterPro:IPR013083 | InterPro:IPR036465 | RefSeq:NP_001326107.1 |
| PFAM:PF00092 | PFAM:PF14624 | PFAM:PF17123 | PFscan:PS50089 | PFscan:PS50234 | PANTHER:PTHR10579 |
| PANTHER:PTHR10579:SF71 | SMART:SM00184 | SMART:SM00327 | SUPFAM:SSF53300 | SUPFAM:SSF57850 | UniParc:UPI0008486F2E |
| InterPro:VWF_A | InterPro:Vwaint_dom | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | InterPro:vWFA_dom_sf |
Description
Zinc finger (C3HC4-type RING finger) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LN98]
Coordinates
chr3:+:20278798..20281429
Molecular Weight (calculated)
75958.5 Da
IEP (calculated)
8.182
GRAVY (calculated)
-0.207
Length
682 amino acids
Sequence
(BLAST)
(BLAST)
001: MNTHHQTTLP LILIIISTNT HFPLGFFKLL SESSHFWFTF PLSPLLLTKM VSKWKKMKLA LSLNLCNYLP RTLEEEPPSL ALNSAETLSD AALLSPLNWP
101: MTPTPSSYRR RLSRSSSKSS KQTCSICLNK MKEGCGHAIF TAECSHMFHF HCIASNVKHG NQVCPVCRAK WKEIPIQKPS LDLPYYPFDR CNNDAAISLF
201: RCLPPSQRAI TQGHPEPATF DDDERLEEQI VFDGETEVLK KENRDYVRMM DMKVYPEVSA VPQSKSCENF DVLVHLKAVT GDQISQYRRA PIDLVTVLDI
301: SGSMGGTKLA LLKRAMGFVI QNLGSSDRLS VIAFSSTARR LFPLTRMSDA GRQLALQAVN SLVANGGTNI VDGLRKGAKV MEDRLERNSV ASIILLSDGR
401: DTYTTNHPDP SYKDALAQCI GGLLSVAVQE LRVEIEGVSP NVRLSSIKAG SYSSLVTGDG HSGLVDLGDL YADEERDFLV SINIPVEEDG HTPLLKLRCL
501: YINPLTKEIT TLESHVLQIR RPEYVAEEKV VPIEVVRQRN RFLAAEAMAQ ARTLAEHGDL EAAVKAIENF RLVLAETVAA KSCDRFCVAL DSELKEMQGR
601: MRSSHMYEAS GRAYILSGLS SHSWQRATAR GNSRDSSSFV QAYQTPSMAE MLRRSQAMFL VSPSHHRLIQ PLLSFASQPK PR
101: MTPTPSSYRR RLSRSSSKSS KQTCSICLNK MKEGCGHAIF TAECSHMFHF HCIASNVKHG NQVCPVCRAK WKEIPIQKPS LDLPYYPFDR CNNDAAISLF
201: RCLPPSQRAI TQGHPEPATF DDDERLEEQI VFDGETEVLK KENRDYVRMM DMKVYPEVSA VPQSKSCENF DVLVHLKAVT GDQISQYRRA PIDLVTVLDI
301: SGSMGGTKLA LLKRAMGFVI QNLGSSDRLS VIAFSSTARR LFPLTRMSDA GRQLALQAVN SLVANGGTNI VDGLRKGAKV MEDRLERNSV ASIILLSDGR
401: DTYTTNHPDP SYKDALAQCI GGLLSVAVQE LRVEIEGVSP NVRLSSIKAG SYSSLVTGDG HSGLVDLGDL YADEERDFLV SINIPVEEDG HTPLLKLRCL
501: YINPLTKEIT TLESHVLQIR RPEYVAEEKV VPIEVVRQRN RFLAAEAMAQ ARTLAEHGDL EAAVKAIENF RLVLAETVAA KSCDRFCVAL DSELKEMQGR
601: MRSSHMYEAS GRAYILSGLS SHSWQRATAR GNSRDSSSFV QAYQTPSMAE MLRRSQAMFL VSPSHHRLIQ PLLSFASQPK PR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.