Factsheet for HORVU2Hr1G088110.4

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G382300.1	Wheat	mitochondrion	94.86	95.54
TraesCS2A01G364100.2	Wheat	cytosol, mitochondrion	94.86	95.4
TraesCS2D01G361900.1	Wheat	mitochondrion	94.14	95.23
Os04t0508800-01	Rice	plasma membrane	79.14	78.25
OQU81931	Sorghum	mitochondrion	72.43	72.74
Zm00001d025825_P001	Maize	mitochondrion	71.71	71.31
HORVU6Hr1G057680.2	Barley	cytosol, mitochondrion, nucleus	71.57	70.37
GSMUA_Achr5P20480_001	Banana	mitochondrion	51.0	56.31
GSMUA_Achr11P...	Banana	mitochondrion	49.57	55.52
GSMUA_Achr1P03470_001	Banana	mitochondrion, plastid	50.43	55.16
HORVU4Hr1G086310.1	Barley	cytosol	19.29	54.88
HORVU4Hr1G084370.1	Barley	cytosol	13.43	54.02
VIT_13s0019g04440.t01	Wine grape	endoplasmic reticulum	53.57	52.82
Bra005066.1-P	Field mustard	mitochondrion	47.86	51.07
CDY31517	Canola	extracellular, mitochondrion, plastid	43.57	51.0
VIT_06s0004g02630.t01	Wine grape	mitochondrion, nucleus	53.0	50.89
PGSC0003DMT400059986	Potato	nucleus	52.71	50.76
GSMUA_Achr11P...	Banana	mitochondrion	39.0	50.74
CDX74871	Canola	mitochondrion	44.14	50.66
Solyc05g056140.2.1	Tomato	nucleus	52.43	50.41
CDX91506	Canola	mitochondrion	43.57	50.16
CDY52708	Canola	extracellular, mitochondrion, plastid	43.0	50.0
AT2G38970.1	Thale cress	mitochondrion	49.0	49.57
HORVU4Hr1G084340.1	Barley	mitochondrion	49.57	49.08
AT5G60710.1	Thale cress	extracellular, mitochondrion, plastid	48.57	48.3
HORVU6Hr1G088580.4	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	51.14	48.25
Bra020234.1-P	Field mustard	mitochondrion	47.71	48.06
Bra002456.1-P	Field mustard	mitochondrion, plastid	47.57	47.57
CDY72156	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	36.57	47.5
PGSC0003DMT400020896	Potato	mitochondrion, plastid	49.57	47.34
Solyc11g069600.1.1	Tomato	plastid	49.29	47.07
CDY67781	Canola	cytosol	35.43	46.88
CDY32819	Canola	cytosol	39.29	45.53
Bra030712.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	39.43	45.17
AT3G54780.4	Thale cress	endoplasmic reticulum, extracellular, plastid	44.0	45.16
AT1G08050.1	Thale cress	plastid	40.57	44.31
CDX93597	Canola	cytosol	38.71	42.15
HORVU1Hr1G038870.1	Barley	plastid	38.14	41.78
GSMUA_Achr2P11780_001	Banana	golgi	28.0	41.53
CDX95099	Canola	cytosol	33.14	41.28
HORVU5Hr1G076190.1	Barley	cytosol, peroxisome	29.86	40.27
HORVU1Hr1G092690.1	Barley	cytosol	31.86	39.89
HORVU4Hr1G084330.1	Barley	cytosol	40.71	37.7
HORVU0Hr1G005150.3	Barley	cytosol, vacuole	38.29	36.51
HORVU4Hr1G001800.2	Barley	cytosol	17.86	27.11
HORVU4Hr1G084380.2	Barley	cytosol	21.43	26.64
HORVU7Hr1G001030.5	Barley	cytosol	19.86	26.48
HORVU5Hr1G001270.2	Barley	cytosol	13.57	26.46
HORVU5Hr1G070100.1	Barley	cytosol	19.0	25.33
HORVU5Hr1G001450.1	Barley	cytosol	19.0	25.33
HORVU0Hr1G036570.1	Barley	mitochondrion	12.57	23.04
Bra018663.1-P	Field mustard	nucleus	38.57	20.47
HORVU7Hr1G098290.1	Barley	cytosol, peroxisome, plasma membrane	17.14	16.67
HORVU2Hr1G118990.1	Barley	cytosol	21.0	16.01
HORVU0Hr1G022100.1	Barley	cytosol	7.71	7.51

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	EnsemblPlantsGene:HORVU2Hr1G088110	EnsemblPlants:HORVU2Hr1G088110.4	InterPro:IPR001841
InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	UniProt:M0YJK9	PFAM:PF00092	PFAM:PF14624
PFAM:PF17123	PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF49	SMART:SM00184
SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0002953F2D	InterPro:VWF_A	InterPro:Vwaint_dom
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

No Description!

Coordinates

chrchr2H:-:631976572..631982105

Molecular Weight (calculated)

75895.7 Da

IEP (calculated)

8.319

GRAVY (calculated)

-0.402

Length

700 amino acids

Sequence
(BLAST)

001: MEGAWRKAKR ALALRLCVQV PADGDGEDPS PRPAASGAGA GGCRGEAAVT VGSPPDEPVA GAGAAFRRSK SGSRSSSKRK CAICFDSMRS GHGQALFTAE
101: CSHKFHFHCI SSNVKHGNHV CPVCRAKWKE IPLNRSLSSH IPDGRRGING VQLPQQDAYV ALLHQVPNRQ RGVRRLHTSE PTDFNDDEPL QQTEATDSLN
201: SRSKKTAEIS TYPEFSSIPQ SSTHDGFSVL IHLKAPSASP DQATGRLVNE SSVRSPSGRA PVDLVTVIDI SGSMAGTKLA LLKRAMGFVI QHLGPSDRLS
301: VIAFSSSARR LFHLQRMSHY GRQQALQAIN SLGAGGGTNI ADALKKATKV IEDRSYKNSV CSIILLSDGQ DTYNICSNVR GGSKDYSSLV PLSILSDTRR
401: MLPIHAFGFG ADHDSDSLHS IAEASGGTFS FIEDEGVMQD AFAQCIGGLL SVVVQEMRLN MECVHPGVQL CSIKSGSYPS MMARDGRSCS VDIGHLYADE
501: ERDILLSVNI PQCREQTSLL KVACSYRDLT NETIKLQVDE VKINRPTSTI SEHVSIEVDR ERNRIQAADS IESARSAAER GALAEAVTIL EDCRRRLSVS
601: FASRSGDRLS LALDAELREM QERMASRQLY EASGRAYMLS GLSSHSWQRA TTRGDSTESS TIVHSYQTPS MVQMLQHSQS HIPSPPGQQP HARPPRPSAR

Best Arabidopsis Sequence Match ( AT2G38970.1 )
(BLAST)

001: MGTRWRRMKL ALGLNLCTYL PRTLEESPTP LNSTERLSDV ALLSPLNWPM TPTPSSHGLK LSRNSSKSSK TCSICLNKMK EGGGHALFTA ECSHSFHFHC
101: IASNVKHGNQ VCPVCRAKWK EIPMQHPSFD LPYLFARSYN NDAAISLVHR LPRSRGVMNQ GRGLAPEPSM FDDDERLEQQ LVFSGKSYSD ALENNHPVRM
201: MDLKIYPEVS AVPRADSREK FDVLVHLRAA AMVTGNANSL NNQISRYPRA PVDLVTVLDI SGSMAGTKLA LLKRAMGFVI QNLGSNDRLS VIAFSSTARR
301: LFPLTKMSDA GRQRALQAVN SVVANGGTNI AEGLRKGVKV MEDRRDKNPV ASIILLSDGR DTYTMNQADP NYKLLLPLSM HGCESKRFQI PVHSFGFGSD
401: HDASLMHSVS ETSGGTFSFI ESESVIQDAL AQCIGGLLSV AVQELRLEIE GMCSDVHLSS IKAGSYQSLV SGDGRSGCVD IGDLYADEER DFLISVNIPP
501: QKDGNETPLL KMRCVYKDLL TKEIVTLQSH MLKIQRPETV GQEVVVSIEV DRQRNRFLAA EAMVKARALA EREDLAAGVT AIQNFRVALA ETVSAKSGDG
601: FCVALDRELK EMQERMASRH VYEVSGRAYI LSGLSSHSWQ RATSRGESGD GSSFVQAYYQ TPSMVEMLHR SQATSHHHRL IQPLFASQPK PR

Arabidopsis Description

Zinc finger (C3HC4-type RING finger) family protein [Source:UniProtKB/TrEMBL;Acc:F4IU12]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.