Factsheet for HORVU6Hr1G088580.4

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G360000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	97.84	98.37
TraesCS6B01G413100.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	97.71	98.11
TraesCS6A01G375500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	96.77	97.69
Os02t0806700-01	Rice	nucleus	84.77	87.0
OQU85917	Sorghum	nucleus	85.18	85.75
Zm00001d051977_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	84.23	85.5
Zm00001d018428_P001	Maize	mitochondrion	83.02	83.36
HORVU4Hr1G084370.1	Barley	cytosol	12.94	55.17
GSMUA_Achr6P36520_001	Banana	plastid	51.08	54.22
HORVU6Hr1G057680.2	Barley	cytosol, mitochondrion, nucleus	50.81	52.95
HORVU2Hr1G088110.4	Barley	cytosol, mitochondrion	48.25	51.14
HORVU4Hr1G086310.1	Barley	cytosol	16.17	48.78
HORVU4Hr1G084340.1	Barley	mitochondrion	45.42	47.67
HORVU5Hr1G076190.1	Barley	cytosol, peroxisome	28.71	41.04
HORVU1Hr1G092690.1	Barley	cytosol	29.51	39.18
HORVU1Hr1G038870.1	Barley	plastid	33.42	38.81
HORVU4Hr1G084330.1	Barley	cytosol	37.47	36.77
HORVU0Hr1G005150.3	Barley	cytosol, vacuole	36.25	36.65
HORVU4Hr1G084380.2	Barley	cytosol	21.29	28.06
HORVU5Hr1G001270.2	Barley	cytosol	12.8	26.46
HORVU5Hr1G070100.1	Barley	cytosol	18.06	25.52
HORVU5Hr1G001450.1	Barley	cytosol	18.06	25.52
HORVU4Hr1G001800.2	Barley	cytosol	15.77	25.38
HORVU7Hr1G001030.5	Barley	cytosol	17.79	25.14
HORVU0Hr1G036570.1	Barley	mitochondrion	12.13	23.56
HORVU7Hr1G098290.1	Barley	cytosol, peroxisome, plasma membrane	16.98	17.5
HORVU2Hr1G118990.1	Barley	cytosol	19.68	15.9
HORVU0Hr1G022100.1	Barley	cytosol	8.76	9.04

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	EMBL:AK373542	UniProt:F2EBL7	EnsemblPlantsGene:HORVU6Hr1G088580
EnsemblPlants:HORVU6Hr1G088580.4	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	PFAM:PF00092
PFAM:PF14624	PFAM:PF17123	PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF97
SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI00020085C5	InterPro:VWF_A
InterPro:Vwaint_dom	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2EBL7]

Coordinates

chrchr6H:-:566850927..566857785

Molecular Weight (calculated)

79658.3 Da

IEP (calculated)

8.226

GRAVY (calculated)

-0.328

Length

742 amino acids

Sequence
(BLAST)

001: MESRWRKAKM SLGLNLCVYV PRTLDDMDNA GPPSTGSSTA ALVSPAASSS ASSYATSANT TPTADTPNGS ARGPGALMPT TPTPTSAGLR LSKSGSKSFK
101: KTCAICLTIM KPGQGHALFT AECSHTFHFH CISANVKHGS NSCPVCRTEW KELPFRGPLV ASIPQGSARI NPVNGQQNGG HMTLLRPLPR ARSSGRLHHV
201: TCLLPDTDRS VFNDDEPLDL CEATEDHQQG CSRTVEITTH PEFTEIPEST SERSFTVLIH LKAPLAQSLH VPGDDNGPNT GRAPVDLITV LDVSGSMAGT
301: KLALLKRAMG FVIQNLGSSD RLSVIAFSSS ARRLFPLRRM TESGRKQSLL AVNSLTSNGG TNIAEGLRKG SKVIEERQAK NPVCSIILLS DGQDTYTVSP
401: STGAHKPYTV SPTAGAQKAS AEYCALLPST NGSQQVPVHV FGFGADHDAV SLHSISQTSG GTFSFIETEA TIQDAFAQCI GGLLSVVAQD LRVKVESVHP
501: DVHFGSIRSG SYSSRIADDK RNGSIDVGDL YAEEERDFLM TLNVPQGCGD ETALLKVGCV YKDPLMKETI NMAEVQVKIS RPAFVSVQTV SIQVDRQKNR
601: LHAAEVMAAA RFSAERGELA HAVSLLEDCR RMITGSASGQ SGDRLCQSLD AELKQMQERM ASRQRYEASG RAYVLSGLSS HSWQRATARG DSTDSESLIQ
701: AYQTTSMVDM VLRSQTLTRS STPKQTPQMR HAKSFPAHPQ PR

Best Arabidopsis Sequence Match ( AT5G60710.1 )
(BLAST)

001: MGSKWRKAKV ALGLNLCLYV PKTLEDSSPP RRSDDAVSLS PVIVQRPSTP TPSSSGLRLP RSMSKSSSKK TCAICLTAMK AGQGHAIFTA ECSHSFHFQC
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR

Arabidopsis Description

Retroelement pol polyprotein-like [Source:UniProtKB/TrEMBL;Acc:Q9FF49]
SUBAcon: [mitochondrion,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.