Factsheet for TraesCS6D01G360000.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus, plastid, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G375500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	98.78	99.18
TraesCS6B01G413100.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	99.19	99.05
HORVU6Hr1G088580.4	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	98.37	97.84
Os02t0806700-01	Rice	nucleus	85.77	87.55
OQU85917	Sorghum	nucleus	85.5	85.62
Zm00001d051977_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	84.69	85.5
Zm00001d018428_P001	Maize	mitochondrion	83.06	82.95
GSMUA_Achr6P36520_001	Banana	plastid	51.35	54.22
TraesCS6D01G207700.2	Wheat	mitochondrion	50.81	52.82
TraesCS2D01G361900.1	Wheat	mitochondrion	48.92	52.17
TraesCS4D01G339200.1	Wheat	mitochondrion	46.48	48.51
TraesCS5D01G348200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	32.11	41.73
TraesCS2D01G357400.1	Wheat	cytosol, nucleus, peroxisome	36.45	41.64
TraesCS1D01G433500.1	Wheat	cytosol	32.66	40.92
TraesCS5D01G472700.1	Wheat	cytosol	32.38	39.83
TraesCS1D01G144900.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome, plastid	34.96	37.77
TraesCS4D01G339300.1	Wheat	cytosol	37.4	36.85
TraesCS2D01G459400.1	Wheat	mitochondrion	25.61	36.07
TraesCS4D01G351600.1	Wheat	plastid	26.69	34.74
TraesCS7D01G434400.1	Wheat	cytosol	18.7	26.49
TraesCS5D01G016400.1	Wheat	cytosol	16.94	25.83
TraesCS3D01G516600.1	Wheat	cytosol	18.16	25.67
TraesCS5D01G016600.1	Wheat	cytosol	18.02	25.43
TraesCS7D01G010200.1	Wheat	cytosol	17.75	25.0
TraesCS2D01G043700.1	Wheat	peroxisome	24.8	23.98
TraesCS5D01G182800.1	Wheat	cytosol, plastid	16.4	21.3
TraesCS7D01G418800.1	Wheat	cytosol, peroxisome, plasma membrane	17.21	17.45
TraesCS6D01G009300.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	16.67	16.62
TraesCS5D01G016700.1	Wheat	mitochondrion	15.85	13.62

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083
InterPro:IPR036465	PFAM:PF00092	PFAM:PF14624	PFAM:PF17123	PFscan:PS50089	PFscan:PS50234
PANTHER:PTHR10579	PANTHER:PTHR10579:SF97	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850
EnsemblPlantsGene:TraesCS6D01G360000	EnsemblPlants:TraesCS6D01G360000.1	InterPro:VWF_A	InterPro:Vwaint_dom	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
TIGR:cd16448	SEG:seg	InterPro:vWFA_dom_sf	:	:	:

Description

No Description!

Coordinates

chr6D:-:451907885..451913094

Molecular Weight (calculated)

79271.0 Da

IEP (calculated)

8.133

GRAVY (calculated)

-0.307

Length

738 amino acids

Sequence
(BLAST)

001: MESRWRKAKM SLGLNLCVYV PRTLDDLDAG PPSTGSSTAA LVSPAASSSS SYATSANTTP TADPGSAKGP GALMPTTPTP TSAGLRLSKS GSKSFKKTCA
101: ICLTIMKPGQ GHALFTAECS HTFHFHCISA NVKHGSNNCP VCRTEWKELP FRGPLVAAIP QGSARINPVN GQQNGGHMTL LRPLPRARSS GRLHHVTCLL
201: PDTDRSVFND DEPLDLCEAT EDHQQGCSRT VEITTHPEFT EIPESTSERS FTVLIHLKAP LAQSLHVPGD DSSPNTGRAP VDLITVLDVS GSMAGTKLAL
301: LKRAMGFVIQ NLGSSDRLSV IAFSSSARRL FPLRRMTESG RKQSLLAVNS LTSNGGTNIA EGLRKGSKVI EERQAKNPVC SIILLSDGQD TYTVSPSTGA
401: HKPFTVSPTA SAQKASAEYC ALLPSTNGSQ QVPVHVFGFG ADHDAVSLHS ISQTSGGTFS FIETEATIQD AFAQCIGGLL SVVAQDLRVK VESVHPDVHF
501: GSIRSGSYSS RIADDKRNGS IDVGDLYAEE ERDFLMTLNV PQGCGDETAL LKVGCVYKDP LMKETINMAE VQVKISRPAF VSVQTVSIQV DRQKNRLHAA
601: EVMAAARFSA ERGELAHAVS LLEDCRRMIM GSASGQSGDR LCQSLDAELK EMQERMASRQ RYEASGRAYV LSGLSSHSWQ RATARGDSTD SESLIQAYQT
701: TSMVDMVLRS QTLTRSSTPK QTPQMRHAKS FPAHPQPR

Best Arabidopsis Sequence Match ( AT5G60710.1 )
(BLAST)

001: MGSKWRKAKV ALGLNLCLYV PKTLEDSSPP RRSDDAVSLS PVIVQRPSTP TPSSSGLRLP RSMSKSSSKK TCAICLTAMK AGQGHAIFTA ECSHSFHFQC
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR

Arabidopsis Description

Retroelement pol polyprotein-like [Source:UniProtKB/TrEMBL;Acc:Q9FF49]
SUBAcon: [mitochondrion,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.