Factsheet for TraesCS1D01G144900.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, mitochondrion, plastid, cytosol, nucleus

Predictor Summary:

plastid 2
mitochondrion 3
peroxisome 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G164800.1	Wheat	cytosol, nucleus, peroxisome	89.75	96.38
HORVU1Hr1G038870.1	Barley	plastid	88.58	94.68
EER91508	Sorghum	cytosol, plastid	60.91	64.3
Zm00001d032753_P001	Maize	cytosol	59.15	62.93
TraesCS1D01G433500.1	Wheat	cytosol	47.88	55.52
TraesCS5D01G348200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	45.53	54.75
TraesCS5D01G472700.1	Wheat	cytosol	47.0	53.5
TraesCS2D01G357400.1	Wheat	cytosol, nucleus, peroxisome	48.02	50.77
TraesCS4D01G351600.1	Wheat	plastid	41.0	49.38
TraesCS2D01G459400.1	Wheat	mitochondrion	35.87	46.76
TraesCS4D01G339300.1	Wheat	cytosol	50.37	45.93
TraesCS2D01G361900.1	Wheat	mitochondrion	39.82	39.31
TraesCS6D01G207700.2	Wheat	mitochondrion	40.85	39.3
TraesCS4D01G339200.1	Wheat	mitochondrion	38.95	37.62
TraesCS6D01G360000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	37.77	34.96
TraesCS5D01G016400.1	Wheat	cytosol	19.33	27.27
TraesCS7D01G434400.1	Wheat	cytosol	20.2	26.49
TraesCS7D01G010200.1	Wheat	cytosol	20.06	26.14
TraesCS5D01G016600.1	Wheat	cytosol	19.77	25.81
TraesCS3D01G516600.1	Wheat	cytosol	19.62	25.67
TraesCS2D01G043700.1	Wheat	peroxisome	24.01	21.49
TraesCS5D01G182800.1	Wheat	cytosol, plastid	16.84	20.25
TraesCS7D01G418800.1	Wheat	cytosol, peroxisome, plasma membrane	18.74	17.58
TraesCS6D01G009300.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	18.89	17.43
TraesCS5D01G016700.1	Wheat	mitochondrion	20.79	16.53

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083
InterPro:IPR036465	PFAM:PF00092	PFAM:PF13639	PFAM:PF14624	PFscan:PS50089	PFscan:PS50234
PFscan:PS51257	PANTHER:PTHR10579	PANTHER:PTHR10579:SF72	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300
SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS1D01G144900	EnsemblPlants:TraesCS1D01G144900.1	InterPro:VWF_A	InterPro:Vwaint_dom	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	TIGR:cd16448	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

No Description!

Coordinates

chr1D:-:200093275..200095326

Molecular Weight (calculated)

72522.6 Da

IEP (calculated)

8.739

GRAVY (calculated)

-0.294

Length

683 amino acids

Sequence
(BLAST)

001: MNLNRVQHGA CGNAIMQSLS SCTICQTSLT AISSACGQRP IAKPGAAMES NSSTCAICNG DMRRGGGGGS GFTADCSHQF HYRCVSGSLA SSRQACPLCS
101: ARCRDLPSFR SSKSYTPSQP PPASRAPAQP FFRPMEPRVF DDDDPVLRAP RPLGDRQYGA ASATSSGSLA VALSTHCEYS SLARDAPHEN FAVLVHARAP
201: GTGSAATGGA PSRARAPIDL VTVLDVSGSM VGSKLALLKQ AMGFVVDSLG PADRLCVVSF SSGANRLMRL ARMSESDGGK DLAKRAVQSL AAGGGTNIGA
301: ALRKAAKVLD DRLHKNAVAS VILLSDGQDT YTVPRRGRDA NYDALVPPSF MYTGAGDRSA PVHTFGFGTD HDAAAMHTIA EATGGTFSFI ENEADIQDAF
401: AQCIGGLLSV AVQELRVDIA CPQSGVRVRS VNSGRYRSHI NVDGRSASID VGELYADEER RFLLLMDVPR ARSTTDVTHL MQVSCAYRDM VTGRPTNVDG
501: EDAVVLRPSR AVSLERSAEV ERERVRLAAT EGIAAARAAA ERGAHEEAAE ILQSGQRAVA RSAAARAGDS MCVELSRDLQ EMSTRVADRR RYELSGRAYM
601: LAGLSSHAQQ RATSRQMSGD SGTTRRTAEA ALGTTVISTT GATASYSYVT PAMMDMLDRS RRSREMTALS QQRSKERRRS AHY

Best Arabidopsis Sequence Match ( AT1G08050.1 )
(BLAST)

001: MENPNNLRES KSHLNLNECL TLPKTLDPSS PSPSDASRSS VDPNRPDSSS SRPGSTPSSS GLRFSKGRCA ICLYEIRKED GKAIFTAECS HSFHFDCITS
101: NVKHGNRICP LCRTQWKQVP LCDVDSVPTF VAQRGFEDDE PLPQGDTQIH SDGHRSDHQA LEIKLFPEVS ALAKPVSRAD FAVLVHLKAE GVSDDARRAR
201: APLDLITVLD VSGSMDGVKM ELMKNAMSFV IQNLGETDRL SVISFSSMAR RLFPLRLMSE TGKQAAMQAV NSLVADGGTN IAEGLKIGAR VIEGRRWKNP
301: VSGMMLLSDG QDNFTFSHAG VRLRTDYESL LPSSCRIPIH TFGFGSDHDA ELMHTISEVS SGTFSFIETE TVIQDAFAQC IGGLLSVVIL EQVVEIECIH
401: EQGLKISSIK AGSYRSRIAP DARTATIDVG DMYAEEERDF LVLLEIPCCD NGSGESESLS LLKVRCVYKD PVTKEIVHVE SGELSIQRPM KLTGKEVVSI
501: EVDRQLNRFL VSQAMSEARV LADGGDLSGA VGILRNRERE LSETPSAQSS DRLCQSLSSE LSALQERMTS RRMYRTSGRA YAFSSMSSHS AQRATARGDS
601: TQGFSPVQAY QTSPMARMVT RSQLLVLESP TKPSPGRGEQ S

Arabidopsis Description

T6D22.13 [Source:UniProtKB/TrEMBL;Acc:Q9LN03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.