Factsheet for TraesCS2D01G361900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, secretory
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G364100.2	Wheat	cytosol, mitochondrion	97.83	97.27
TraesCS2B01G382300.1	Wheat	mitochondrion	96.68	96.26
HORVU2Hr1G088110.4	Barley	cytosol, mitochondrion	95.23	94.14
Os04t0508800-01	Rice	plasma membrane	78.9	77.12
OQU81931	Sorghum	mitochondrion	73.12	72.6
TraesCS6D01G207700.2	Wheat	mitochondrion	72.69	70.85
Zm00001d025825_P001	Maize	mitochondrion	71.97	70.74
GSMUA_Achr11P...	Banana	mitochondrion	50.87	56.32
GSMUA_Achr5P20480_001	Banana	mitochondrion	51.59	56.31
GSMUA_Achr1P03470_001	Banana	mitochondrion, plastid	51.3	55.47
VIT_13s0019g04440.t01	Wine grape	endoplasmic reticulum	54.91	53.52
CDY31517	Canola	extracellular, mitochondrion, plastid	44.8	51.84
Bra005066.1-P	Field mustard	mitochondrion	48.99	51.68
VIT_06s0004g02630.t01	Wine grape	mitochondrion, nucleus	54.19	51.44
PGSC0003DMT400059986	Potato	nucleus	53.76	51.17
CDX74871	Canola	mitochondrion	44.94	50.98
Solyc05g056140.2.1	Tomato	nucleus	53.47	50.82
CDX91506	Canola	mitochondrion	44.65	50.82
GSMUA_Achr11P...	Banana	mitochondrion	39.45	50.74
CDY52708	Canola	extracellular, mitochondrion, plastid	44.08	50.66
AT2G38970.1	Thale cress	mitochondrion	50.29	50.29
AT5G60710.1	Thale cress	extracellular, mitochondrion, plastid	50.0	49.15
TraesCS4D01G339200.1	Wheat	mitochondrion	50.14	49.08
Bra020234.1-P	Field mustard	mitochondrion	49.13	48.92
TraesCS6D01G360000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	52.17	48.92
Bra002456.1-P	Field mustard	mitochondrion, plastid	48.99	48.43
CDY72156	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	37.14	47.68
PGSC0003DMT400020896	Potato	mitochondrion, plastid	50.29	47.48
CDY67781	Canola	cytosol	36.13	47.26
Solyc11g069600.1.1	Tomato	plastid	50.0	47.2
CDY32819	Canola	cytosol	40.03	45.86
AT3G54780.4	Thale cress	endoplasmic reticulum, extracellular, plastid	44.94	45.6
TraesCS5D01G348200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	37.28	45.42
Bra030712.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	39.88	45.17
AT1G08050.1	Thale cress	plastid	40.9	44.15
TraesCS5D01G472700.1	Wheat	cytosol	37.43	43.17
TraesCS2D01G357400.1	Wheat	cytosol, nucleus, peroxisome	40.03	42.88
GSMUA_Achr2P11780_001	Banana	golgi	28.61	41.95
CDX93597	Canola	cytosol	38.73	41.68
TraesCS1D01G433500.1	Wheat	cytosol	35.12	41.26
CDX95099	Canola	cytosol	33.24	40.93
TraesCS1D01G144900.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome, plastid	39.31	39.82
TraesCS4D01G339300.1	Wheat	cytosol	41.91	38.72
TraesCS4D01G351600.1	Wheat	plastid	31.07	37.92
TraesCS2D01G459400.1	Wheat	mitochondrion	27.31	36.07
TraesCS7D01G434400.1	Wheat	cytosol	20.38	27.06
TraesCS5D01G016600.1	Wheat	cytosol	20.23	26.77
TraesCS5D01G016400.1	Wheat	cytosol	18.5	26.45
TraesCS3D01G516600.1	Wheat	cytosol	19.8	26.25
TraesCS7D01G010200.1	Wheat	cytosol	19.8	26.14
TraesCS2D01G043700.1	Wheat	peroxisome	25.87	23.46
TraesCS5D01G182800.1	Wheat	cytosol, plastid	17.49	21.3
Bra018663.1-P	Field mustard	nucleus	38.58	20.24
TraesCS7D01G418800.1	Wheat	cytosol, peroxisome, plasma membrane	18.06	17.17
TraesCS6D01G009300.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	17.92	16.76
TraesCS5D01G016700.1	Wheat	mitochondrion	18.93	15.25

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083
InterPro:IPR036465	PFAM:PF00092	PFAM:PF14624	PFAM:PF17123	PFscan:PS50089	PFscan:PS50234
PANTHER:PTHR10579	PANTHER:PTHR10579:SF49	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850
SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS2D01G361900	EnsemblPlants:TraesCS2D01G361900.1	InterPro:VWF_A	InterPro:Vwaint_dom	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	TIGR:cd16448	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

No Description!

Coordinates

chr2D:-:467240947..467245678

Molecular Weight (calculated)

75084.7 Da

IEP (calculated)

8.486

GRAVY (calculated)

-0.410

Length

692 amino acids

Sequence
(BLAST)

001: MESAWRKAKR ALALRLCVLV PAEGDGRPAA SGAGGCRGEA AVTVGSAPEE PAAGGGALRR SKSGSRSSSK RKCAICFDSM RSGHGQALFT AECSHKFHFH
101: CISSNVKHGN HVCPVCRAKW KEIPLNRSLS SNIPDGRRGI NGVQLPQQDA YVALLHQVPN RQRGVRRLHT FEPTDFNDDE SLQQTEATDS LNSRSKKTAE
201: ISTYPEFSSI PQSSSQDGFS VLIHLKAPSA SSDQATGRLV NESSVRSPSG RAPVDLVTVI DISGSMAGTK LALLKRAMGF VIQHLGPSDR LSVIAFSSSA
301: RRLFHLQRMS HYGRQQALQA INSLGAGGGT NIAEALKKAT KVIEDRSYKN SVCSIILLSD GQDTYNLSSN ARGGSKDYST LVPQSILDDT RRMLPIHAFG
401: FGADHDSDSL HSVAEASGGT FSFIEDEGVM QDAFAQCIGG LLSVVVQEMR LNMECVHPGV QLCSIKSGSY PSMMARDGRS CSVDIGHLYA DEERDILLSV
501: NIPQSREQTS LLKVACSYRD LTNETIKLKV DEVKINRPMS AISENVSIEV DRERNRIQAA DSIESARAAA ERGALAEAVT ILEDCRRRLS ESFASRSGDR
601: LSLALDAELR EMQERMASRQ LYEASGRAYM LSGLSSHSWQ RATTRGDSTE SSTIVHSYQT PSMVQMLQHS QSHIPSPPGQ QPQARPPRPS AR

Best Arabidopsis Sequence Match ( AT2G38970.1 )
(BLAST)

001: MGTRWRRMKL ALGLNLCTYL PRTLEESPTP LNSTERLSDV ALLSPLNWPM TPTPSSHGLK LSRNSSKSSK TCSICLNKMK EGGGHALFTA ECSHSFHFHC
101: IASNVKHGNQ VCPVCRAKWK EIPMQHPSFD LPYLFARSYN NDAAISLVHR LPRSRGVMNQ GRGLAPEPSM FDDDERLEQQ LVFSGKSYSD ALENNHPVRM
201: MDLKIYPEVS AVPRADSREK FDVLVHLRAA AMVTGNANSL NNQISRYPRA PVDLVTVLDI SGSMAGTKLA LLKRAMGFVI QNLGSNDRLS VIAFSSTARR
301: LFPLTKMSDA GRQRALQAVN SVVANGGTNI AEGLRKGVKV MEDRRDKNPV ASIILLSDGR DTYTMNQADP NYKLLLPLSM HGCESKRFQI PVHSFGFGSD
401: HDASLMHSVS ETSGGTFSFI ESESVIQDAL AQCIGGLLSV AVQELRLEIE GMCSDVHLSS IKAGSYQSLV SGDGRSGCVD IGDLYADEER DFLISVNIPP
501: QKDGNETPLL KMRCVYKDLL TKEIVTLQSH MLKIQRPETV GQEVVVSIEV DRQRNRFLAA EAMVKARALA EREDLAAGVT AIQNFRVALA ETVSAKSGDG
601: FCVALDRELK EMQERMASRH VYEVSGRAYI LSGLSSHSWQ RATSRGESGD GSSFVQAYYQ TPSMVEMLHR SQATSHHHRL IQPLFASQPK PR

Arabidopsis Description

Zinc finger (C3HC4-type RING finger) family protein [Source:UniProtKB/TrEMBL;Acc:F4IU12]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.