Factsheet for Bra020234.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002456.1-P	Field mustard	mitochondrion, plastid	88.92	88.29
AT5G60710.1	Thale cress	extracellular, mitochondrion, plastid	85.18	84.09
VIT_06s0004g02630.t01	Wine grape	mitochondrion, nucleus	65.61	62.55
PGSC0003DMT400020896	Potato	mitochondrion, plastid	63.31	60.03
Solyc11g069600.1.1	Tomato	plastid	63.02	59.75
Bra005066.1-P	Field mustard	mitochondrion	53.81	57.01
GSMUA_Achr5P20480_001	Banana	mitochondrion	49.93	54.73
GSMUA_Achr11P...	Banana	mitochondrion	49.06	54.56
GSMUA_Achr1P03470_001	Banana	mitochondrion, plastid	49.64	53.91
Bra030712.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	46.47	52.86
GSMUA_Achr11P...	Banana	mitochondrion	40.29	52.04
Os02t0619600-01	Rice	mitochondrion	52.09	51.06
Zm00001d051119_P001	Maize	nucleus	49.78	50.29
Zm00001d017247_P002	Maize	mitochondrion	50.22	50.14
OQU85324	Sorghum	mitochondrion	50.65	50.07
HORVU6Hr1G057680.2	Barley	cytosol, mitochondrion, nucleus	51.08	49.86
TraesCS6D01G207700.2	Wheat	mitochondrion	50.79	49.72
TraesCS6A01G227300.1	Wheat	mitochondrion	50.79	49.65
TraesCS6B01G254400.1	Wheat	mitochondrion	50.65	49.58
TraesCS2D01G361900.1	Wheat	mitochondrion	48.92	49.13
TraesCS2B01G382300.1	Wheat	mitochondrion	49.06	49.06
Os04t0508800-01	Rice	plasma membrane	49.93	49.01
TraesCS2A01G364100.2	Wheat	cytosol, mitochondrion	48.49	48.42
HORVU2Hr1G088110.4	Barley	cytosol, mitochondrion	48.06	47.71
Zm00001d027622_P001	Maize	mitochondrion	47.05	47.25
TraesCS5A01G512800.2	Wheat	mitochondrion	48.06	47.24
TraesCS4B01G344100.1	Wheat	mitochondrion	47.91	47.1
TraesCS4D01G339200.1	Wheat	mitochondrion	47.77	46.96
OQU81931	Sorghum	mitochondrion	46.76	46.63
OQU93256	Sorghum	mitochondrion	46.62	46.42
HORVU4Hr1G084340.1	Barley	mitochondrion	47.19	46.39
Os03t0142500-01	Rice	plasma membrane	46.19	46.25
Zm00001d025825_P001	Maize	mitochondrion	46.04	45.45
GSMUA_Achr2P11780_001	Banana	golgi	28.92	42.58
Bra040498.1-P	Field mustard	plastid	28.78	27.47
Bra017859.1-P	Field mustard	plastid	24.03	26.42
Bra030218.1-P	Field mustard	nucleus	25.04	25.89
Bra024408.1-P	Field mustard	plastid	25.76	25.28
Bra031849.1-P	Field mustard	plastid	25.18	24.72
Bra024913.1-P	Field mustard	mitochondrion	18.13	24.14
Bra018663.1-P	Field mustard	nucleus	45.18	23.81

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	EnsemblPlantsGene:Bra020234	EnsemblPlants:Bra020234.1	EnsemblPlants:Bra020234.1-P
InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	UniProt:M4DUP1	PFAM:PF00092
PFAM:PF13639	PFAM:PF14624	PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF97
SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI000254351A	InterPro:VWF_A
InterPro:Vwaint_dom	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:

Description

AT5G60710 (E=2e-285) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA02:+:5721008..5724692

Molecular Weight (calculated)

75425.3 Da

IEP (calculated)

9.634

GRAVY (calculated)

-0.235

Length

695 amino acids

Sequence
(BLAST)

001: MGSKWRKAKI ALGVNLCLYV PKTLEEESRR SNDAVSLSPV TVPRPTTPVP SSSGLRLPRS FSKSSSKKTC AICLTAMKAG QGHAIFTAEC SHSFHFHCIT
101: TNVKHGNQIC PVCRAKWNEV PLQSPNAKSK SPVKPIIRPR DDAWMTLPPR RSAQNQPSPR PRPVSSIFNT EPAVFNDDEA LEHQKIQNRT AETETGVTGK
201: LEVKTYTEVS EVLRSVSFKD FAVLINLKAP SAAKSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTSRRS FPLRLMNETG
301: KQEALQAVNS LVSNGGTNIA EGLKKGAKVL IDRRFKNSVS SIVLLSDGQD TYTMSTSPNG KGADYKTLLP KEVNRIPVHA FGFGADHDAS LMHSIAENSG
401: GTFSFIESET VIQDAFAQCI GGLLSVVVQE LRVEIECVHP VLRIGSVKAG SYRFDSSTGT IGVGDLYAEE ERNFLVNLDV PVVNGVVSDP MSLLKVRCVY
501: RDPVTKETVD LSDASEVKIL RPVVMSEGSA VVSVEVDRQR IRLRAAEAIS EARVLAERGD LTEAVSVLET CRGVLSESVS GKAGDPLCVS LCAELKETQE
601: RMASRQVYET SGRAYVLAGL SSHSWQRATA RGDMSDTTTM SYQTRSMVDM VNLSQTMNFG SPLASSKANS SSNPNPPARR KLRQALTFPA RPRAR

Best Arabidopsis Sequence Match ( AT5G60710.1 )
(BLAST)

001: MGSKWRKAKV ALGLNLCLYV PKTLEDSSPP RRSDDAVSLS PVIVQRPSTP TPSSSGLRLP RSMSKSSSKK TCAICLTAMK AGQGHAIFTA ECSHSFHFQC
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR

Arabidopsis Description

Retroelement pol polyprotein-like [Source:UniProtKB/TrEMBL;Acc:Q9FF49]
SUBAcon: [mitochondrion,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.