Factsheet for Solyc11g069600.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020896	Potato	mitochondrion, plastid	97.41	97.41
VIT_06s0004g02630.t01	Wine grape	mitochondrion, nucleus	69.99	70.37
CDY31517	Canola	extracellular, mitochondrion, plastid	53.21	65.22
CDY52708	Canola	extracellular, mitochondrion, plastid	52.52	63.95
AT5G60710.1	Thale cress	extracellular, mitochondrion, plastid	61.26	63.78
Bra020234.1-P	Field mustard	mitochondrion	59.75	63.02
Bra002456.1-P	Field mustard	mitochondrion, plastid	58.66	61.43
GSMUA_Achr5P20480_001	Banana	mitochondrion	51.84	59.94
Solyc05g056140.2.1	Tomato	nucleus	59.48	59.89
GSMUA_Achr11P...	Banana	mitochondrion	49.93	58.56
GSMUA_Achr1P03470_001	Banana	mitochondrion, plastid	50.61	57.97
CDY67781	Canola	cytosol	38.88	53.88
CDY72156	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	39.56	53.8
CDY32819	Canola	cytosol	43.79	53.15
AT1G08050.1	Thale cress	plastid	46.11	52.73
Zm00001d017247_P002	Maize	mitochondrion	49.93	52.59
Bra030712.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	43.79	52.54
GSMUA_Achr11P...	Banana	mitochondrion	38.47	52.42
TraesCS6B01G254400.1	Wheat	mitochondrion	50.34	51.97
Os02t0619600-01	Rice	mitochondrion	50.2	51.9
OQU85324	Sorghum	mitochondrion	49.66	51.78
TraesCS6D01G207700.2	Wheat	mitochondrion	50.07	51.69
Zm00001d051119_P001	Maize	nucleus	48.43	51.6
HORVU6Hr1G057680.2	Barley	cytosol, mitochondrion, nucleus	49.93	51.4
TraesCS6A01G227300.1	Wheat	mitochondrion	49.8	51.34
TraesCS2D01G361900.1	Wheat	mitochondrion	47.2	50.0
TraesCS2B01G382300.1	Wheat	mitochondrion	47.2	49.78
TraesCS2A01G364100.2	Wheat	cytosol, mitochondrion	47.07	49.57
Os04t0508800-01	Rice	plasma membrane	47.75	49.44
CDX93597	Canola	cytosol	43.25	49.3
HORVU2Hr1G088110.4	Barley	cytosol, mitochondrion	47.07	49.29
Os03t0142500-01	Rice	plasma membrane	46.38	48.99
CDX95099	Canola	cytosol	37.52	48.93
Zm00001d027622_P001	Maize	mitochondrion	45.29	47.98
TraesCS4D01G339200.1	Wheat	mitochondrion	46.25	47.95
OQU81931	Sorghum	mitochondrion	45.57	47.92
TraesCS4B01G344100.1	Wheat	mitochondrion	45.98	47.67
TraesCS5A01G512800.2	Wheat	mitochondrion	45.98	47.67
Zm00001d025825_P001	Maize	mitochondrion	45.7	47.59
HORVU4Hr1G084340.1	Barley	mitochondrion	45.7	47.38
OQU93256	Sorghum	mitochondrion	44.88	47.13
Solyc02g069470.2.1	Tomato	plastid	43.11	44.63
GSMUA_Achr2P11780_001	Banana	golgi	28.51	44.28
Solyc02g032370.1.1	Tomato	endoplasmic reticulum, extracellular	6.41	40.52
Solyc02g032340.1.1	Tomato	mitochondrion	9.14	39.88
Solyc02g032430.1.1	Tomato	plasma membrane	8.19	36.14
Solyc04g076860.2.1	Tomato	nucleus	28.38	27.73
Solyc02g091710.2.1	Tomato	plastid	27.01	27.58
Solyc04g015280.2.1	Tomato	cytosol, nucleus, plastid	17.74	24.44
Bra018663.1-P	Field mustard	nucleus	42.7	23.73

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0016020	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	UniProt:K4DAB6
PFAM:PF00092	PFAM:PF14624	PFAM:PF17123	PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579
PANTHER:PTHR10579:SF97	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc11g069600.1
EnsemblPlants:Solyc11g069600.1.1	UniParc:UPI000276AACC	InterPro:VWF_A	InterPro:Vwaint_dom	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

No Description!

Coordinates

chr11:-:54231913..54237114

Molecular Weight (calculated)

79561.6 Da

IEP (calculated)

8.435

GRAVY (calculated)

-0.307

Length

733 amino acids

Sequence
(BLAST)

001: MGSKWRKAKL ALGLNTCLYI PKTLEDSPAT ATATASTVAG GRFSDAVSLS PTTPNRNSDC HVDMPTTPTP SSSGLRMPKH HTSKSSKNTC AICLMSMKPG
101: QGHAIFTAEC SHSFHFNCIT SNVKHGNQIC PVCRAKWKEI PFQSPLTDIS QPRSRNGQVH WPQHDAWMTV VRQIPPARLD TNRNISNLFQ TVEPSVFDDD
201: EVVDHRPMGS QKNSSTDVTN HHSMGAIEVK TWPEISAVTK SASHSNFAVL VHLKAPRAVG LLNQSGMPVT GQNSRAPVDL VTVLDVSGSM AGTKLALLKR
301: AMGFVIQNLG PADRLSVIAF SSTARRLFPL RRMSDTGKQE ALQAVNSLSS NGGTNIAEAL KKSAKIMTDR KWKNPVSSII LLSDGQDTYT INSPSVAATQ
401: TNYRSLLPAC MQRNAASSGL HIPVHAFGFG ADHDAVSMHS ISETSGGTFS FIEAENVIQD AFAQCIGGLL SVVVQELCVE VESVHPVLRL NSIKAGSYNA
501: SLASDNRSGN IEVGDLYADE ERDFLVMLDI PADSSSNDMM TLVKVKCTYK DPTQSNNLDL VTLDHIGDVK IERPDTIGQL IVSMEVDKQR NRLQSAEAMA
601: EARSAAENGD LAAAVSVLER CRKKLSETVS AKAGDRLCLA LDAELKEMQE RMANRRVYET SGRAYVLSGL SSHSWQRATA RGDSTDSTSL IQAYQTPSMI
701: DMVSRSQTMY LGSPAPRPPL RPLRSFPARQ QPR

Best Arabidopsis Sequence Match ( AT5G60710.1 )
(BLAST)

001: MGSKWRKAKV ALGLNLCLYV PKTLEDSSPP RRSDDAVSLS PVIVQRPSTP TPSSSGLRLP RSMSKSSSKK TCAICLTAMK AGQGHAIFTA ECSHSFHFQC
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR

Arabidopsis Description

Retroelement pol polyprotein-like [Source:UniProtKB/TrEMBL;Acc:Q9FF49]
SUBAcon: [mitochondrion,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.