Factsheet for PGSC0003DMT400020896

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g069600.1.1	Tomato	plastid	97.41	97.41
VIT_06s0004g02630.t01	Wine grape	mitochondrion, nucleus	70.12	70.51
CDY31517	Canola	extracellular, mitochondrion, plastid	53.21	65.22
CDY52708	Canola	extracellular, mitochondrion, plastid	52.52	63.95
AT5G60710.1	Thale cress	extracellular, mitochondrion, plastid	60.98	63.49
Bra020234.1-P	Field mustard	mitochondrion	60.03	63.31
Bra002456.1-P	Field mustard	mitochondrion, plastid	58.66	61.43
PGSC0003DMT400059986	Potato	nucleus	59.89	60.39
GSMUA_Achr5P20480_001	Banana	mitochondrion	51.98	60.09
GSMUA_Achr11P...	Banana	mitochondrion	50.07	58.72
GSMUA_Achr1P03470_001	Banana	mitochondrion, plastid	50.07	57.34
CDY72156	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	39.7	53.99
CDY67781	Canola	cytosol	38.88	53.88
CDY32819	Canola	cytosol	43.79	53.15
GSMUA_Achr11P...	Banana	mitochondrion	38.61	52.6
Zm00001d017247_P002	Maize	mitochondrion	49.8	52.44
AT1G08050.1	Thale cress	plastid	45.84	52.42
Bra030712.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	43.66	52.37
TraesCS6B01G254400.1	Wheat	mitochondrion	50.48	52.11
Os02t0619600-01	Rice	mitochondrion	50.34	52.05
TraesCS6D01G207700.2	Wheat	mitochondrion	50.34	51.97
OQU85324	Sorghum	mitochondrion	49.8	51.92
Zm00001d051119_P001	Maize	nucleus	48.7	51.89
TraesCS6A01G227300.1	Wheat	mitochondrion	50.07	51.62
HORVU6Hr1G057680.2	Barley	cytosol, mitochondrion, nucleus	50.07	51.54
TraesCS2D01G361900.1	Wheat	mitochondrion	47.48	50.29
TraesCS2B01G382300.1	Wheat	mitochondrion	47.48	50.07
Os04t0508800-01	Rice	plasma membrane	48.29	50.0
TraesCS2A01G364100.2	Wheat	cytosol, mitochondrion	47.34	49.86
HORVU2Hr1G088110.4	Barley	cytosol, mitochondrion	47.34	49.57
Os03t0142500-01	Rice	plasma membrane	46.52	49.14
CDX93597	Canola	cytosol	42.84	48.83
CDX95099	Canola	cytosol	37.11	48.4
OQU81931	Sorghum	mitochondrion	45.84	48.21
Zm00001d027622_P001	Maize	mitochondrion	45.43	48.12
TraesCS4D01G339200.1	Wheat	mitochondrion	46.38	48.09
Zm00001d025825_P001	Maize	mitochondrion	45.98	47.87
TraesCS4B01G344100.1	Wheat	mitochondrion	46.11	47.81
TraesCS5A01G512800.2	Wheat	mitochondrion	46.11	47.81
HORVU4Hr1G084340.1	Barley	mitochondrion	45.84	47.52
OQU93256	Sorghum	mitochondrion	45.02	47.28
GSMUA_Achr2P11780_001	Banana	golgi	28.51	44.28
PGSC0003DMT400054479	Potato	plastid	42.7	44.21
PGSC0003DMT400091492	Potato	nucleus	9.96	43.2
PGSC0003DMT400078676	Potato	plastid	26.6	27.43
PGSC0003DMT400016355	Potato	nucleus	27.97	27.19
PGSC0003DMT400070011	Potato	nucleus	17.87	24.72
Bra018663.1-P	Field mustard	nucleus	42.29	23.5
PGSC0003DMT400085780	Potato	nucleus	9.96	18.72

Protein Annotations

EntrezGene:102582573	Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0016020	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465
UniProt:M1AEA0	PFAM:PF00092	PFAM:PF14624	PFAM:PF17123	EnsemblPlantsGene:PGSC0003DMG400008091	PGSC:PGSC0003DMG400008091
EnsemblPlants:PGSC0003DMT400020896	PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF97	SMART:SM00184
SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI000294E0D1	InterPro:VWF_A	InterPro:Vwaint_dom
RefSeq:XP_006340172.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400008091]

Coordinates

chr11:+:41444163..41450026

Molecular Weight (calculated)

79705.8 Da

IEP (calculated)

8.334

GRAVY (calculated)

-0.326

Length

733 amino acids

Sequence
(BLAST)

001: MGSKWRKAKL ALGLNTCLYI PKTLEDSPAT ASASASTVTG GRLFDAVSLS PTTPNRNSDC HVDMPTTPTP SSSGLRMPKH HNSKSSKSTC AICLMSMKPG
101: QGHAIFTAEC SHSFHFNCIT SNVKHGNQIC PVCRAKWKEI PFQSPLTDIS QPRSRNGQVH WPQHDAWMTV VRQVPPARLD TNRNISNLFQ TVEPSVFDDD
201: EVVDHRPMGS QKNSSTDATN HHSMGAIEVK TWPEISAVTK SASHSNFAVL VHLKAPHAVG LLNQSGMPVT GQNSRAPVDL VTVLDVSGSM AGTKLALLKR
301: AMGFVIQNLG PADRLSVIAF SSTARRLFPL RRMSDTGKQE ALQAVNSLSS NGGTNIAEAL KKSAKIMTDR KWKNPVSSII LLSDGQDTYT INSPSVAAMQ
401: TNYRSLLPAC MQRNAASSGL HIPVHAFGFG ADHDAVSMHS ISETSGGTFS FIEAENVIQD AFAQCIGGLL SVVVQELRVE VECVHPVLRL NSIKAGSYNA
501: SLASDNKSGN IEVGDLYADE ERDFLVMLDI PADRSSNDMM TLVKVKCTYK DPTQSDNSDL VTLDHIDDVK IERPDTIGQL IVSMEVDKQR NRLQSAEAMA
601: EARSAAENGD LAAAVSVLER CRKKLSETVS AKAGDRLCLA LDAELKEMQE RMANRRVYET SGRAYVLSGL SSHSWQRATA RGDSTDSTSL IQAYQTPSMM
701: DMVSRSQTMY LGSPAPRPPL RPLRSFPARQ QPR

Best Arabidopsis Sequence Match ( AT5G60710.1 )
(BLAST)

001: MGSKWRKAKV ALGLNLCLYV PKTLEDSSPP RRSDDAVSLS PVIVQRPSTP TPSSSGLRLP RSMSKSSSKK TCAICLTAMK AGQGHAIFTA ECSHSFHFQC
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR

Arabidopsis Description

Retroelement pol polyprotein-like [Source:UniProtKB/TrEMBL;Acc:Q9FF49]
SUBAcon: [mitochondrion,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.