CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93597	Canola	cytosol	91.64	80.09
CDY72156	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	62.1	64.75
CDY67781	Canola	cytosol	59.79	63.52
CDY32819	Canola	cytosol	65.12	60.6
AT1G08050.1	Thale cress	plastid	69.04	60.53
CDY31517	Canola	extracellular, mitochondrion, plastid	48.75	45.82
CDY52708	Canola	extracellular, mitochondrion, plastid	48.04	44.85
CDX74871	Canola	mitochondrion	46.8	43.11
CDX91506	Canola	mitochondrion	46.44	42.93
GSMUA_Achr11P...	Banana	mitochondrion	43.95	39.52
GSMUA_Achr11P...	Banana	mitochondrion	37.19	38.85
VIT_06s0004g02630.t01	Wine grape	mitochondrion, nucleus	50.36	38.82
GSMUA_Achr5P20480_001	Banana	mitochondrion	43.24	38.33
Solyc11g069600.1.1	Tomato	plastid	48.93	37.52
PGSC0003DMT400020896	Potato	mitochondrion, plastid	48.4	37.11
GSMUA_Achr1P03470_001	Banana	mitochondrion, plastid	42.17	37.03
Zm00001d051119_P001	Maize	nucleus	43.59	35.61
Zm00001d017247_P002	Maize	mitochondrion	43.95	35.49
OQU85324	Sorghum	mitochondrion	43.24	34.57
Os02t0619600-01	Rice	mitochondrion	43.59	34.56
TraesCS6D01G207700.2	Wheat	mitochondrion	43.42	34.37
TraesCS6B01G254400.1	Wheat	mitochondrion	43.42	34.37
TraesCS6A01G227300.1	Wheat	mitochondrion	43.42	34.32
HORVU6Hr1G057680.2	Barley	cytosol, mitochondrion, nucleus	43.42	34.27
TraesCS2B01G382300.1	Wheat	mitochondrion	41.64	33.67
GSMUA_Achr2P11780_001	Banana	golgi	28.11	33.47
Zm00001d027622_P001	Maize	mitochondrion	41.1	33.38
TraesCS2A01G364100.2	Wheat	cytosol, mitochondrion	41.28	33.33
HORVU4Hr1G084340.1	Barley	mitochondrion	41.81	33.24
TraesCS4B01G344100.1	Wheat	mitochondrion	41.81	33.24
TraesCS2D01G361900.1	Wheat	mitochondrion	40.93	33.24
Os04t0508800-01	Rice	plasma membrane	41.81	33.19
HORVU2Hr1G088110.4	Barley	cytosol, mitochondrion	41.28	33.14
TraesCS4D01G339200.1	Wheat	mitochondrion	41.64	33.1
OQU93256	Sorghum	mitochondrion	41.1	33.09
TraesCS5A01G512800.2	Wheat	mitochondrion	41.46	32.96
Os03t0142500-01	Rice	plasma membrane	40.39	32.71
OQU81931	Sorghum	mitochondrion	40.04	32.28
Zm00001d025825_P001	Maize	mitochondrion	40.39	32.24
CDY28148	Canola	plastid	25.27	20.91
CDY45010	Canola	mitochondrion, peroxisome	25.44	19.64
CDY08765	Canola	plastid	24.73	19.63
CDX72660	Canola	cytosol, nucleus, peroxisome, plastid	23.84	19.56
CDY25618	Canola	nucleus, peroxisome, plastid	22.6	19.18
CDY45614	Canola	plastid	24.2	19.1
CDY31616	Canola	nucleus	23.13	18.92
CDY52535	Canola	plastid	23.31	18.45
CDX89500	Canola	cytosol, peroxisome, plastid	22.06	18.43
CDY37838	Canola	plastid	15.48	17.4
CDX77800	Canola	nucleus	15.3	15.14
CDY17702	Canola	mitochondrion	10.32	15.06
CDX93598	Canola	endoplasmic reticulum, golgi, mitochondrion, vacuole	1.96	2.85

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	GO:A0A078E3I2	EnsemblPlants:CDX95099	ProteinID:CDX95099
ProteinID:CDX95099.1	EnsemblPlantsGene:GSBRNA2T00100634001	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465
PFAM:PF00092	PFAM:PF14624	PFAM:PF17123	PFscan:PS50089	PANTHER:PTHR10579	PANTHER:PTHR10579:SF97
SMART:SM00184	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0004EECA65	InterPro:VWF_A	InterPro:Vwaint_dom
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

BnaC05g05720D

Coordinates

chrLK031886:+:1172125..1174143

Molecular Weight (calculated)

60652.7 Da

IEP (calculated)

5.101

GRAVY (calculated)

-0.255

Length

562 amino acids

Sequence
(BLAST)

001: MENPNETLNL PKIQDPSSTD DASRSSVDST RPDPSAPPPL PSSSSKNECA ICLDEIVKGD GKALFTAECC HTFHFDCITT NVKHGNKICP LCRTQWKQVP
101: SFLDNSRPPS RFHIPLPAQA QAQAQAHGDQ RGPPPLEVKL VPQVSAVAKQ ATTLGDFAVL VHLKAGVVSD EVPSRAPLDL VAVLDVSSSM DGAKMELLKN
201: AAIQAVNSLV ADGCTNIAEG LKVGARVIED RRCRSPVPVM MLLSDGQDNY TFSQFGFGVR RQRTNYESLL PSSTSQVPIH AFGFGSDHDA ELMHAISRVS
301: SGTFSFIETE TVIRDAFAQC IGGLLSVVVL EQVVEIECVH QEGVKISSIK AGSYRNSISS DGRSGTISVG DMYAEEERDF LVVLEIPSCE SESMSLLKVR
401: CVYKDPVTRE TVRVESGELI IQRPDELTGE EVVSIEVDRQ RNRFLVSQAI SEAKVLADGG DVRAAAELLR KSERDLAETL SARAGDGLCE SLTFELRALQ
501: EKMRSMSMYQ TSGRAYALSS MSSHSAQRAT ARYSPTSPGY SPGPAGYSMP PTPASPAPGD QT

Best Arabidopsis Sequence Match ( AT1G08050.1 )
(BLAST)

001: MENPNNLRES KSHLNLNECL TLPKTLDPSS PSPSDASRSS VDPNRPDSSS SRPGSTPSSS GLRFSKGRCA ICLYEIRKED GKAIFTAECS HSFHFDCITS
101: NVKHGNRICP LCRTQWKQVP LCDVDSVPTF VAQRGFEDDE PLPQGDTQIH SDGHRSDHQA LEIKLFPEVS ALAKPVSRAD FAVLVHLKAE GVSDDARRAR
201: APLDLITVLD VSGSMDGVKM ELMKNAMSFV IQNLGETDRL SVISFSSMAR RLFPLRLMSE TGKQAAMQAV NSLVADGGTN IAEGLKIGAR VIEGRRWKNP
301: VSGMMLLSDG QDNFTFSHAG VRLRTDYESL LPSSCRIPIH TFGFGSDHDA ELMHTISEVS SGTFSFIETE TVIQDAFAQC IGGLLSVVIL EQVVEIECIH
401: EQGLKISSIK AGSYRSRIAP DARTATIDVG DMYAEEERDF LVLLEIPCCD NGSGESESLS LLKVRCVYKD PVTKEIVHVE SGELSIQRPM KLTGKEVVSI
501: EVDRQLNRFL VSQAMSEARV LADGGDLSGA VGILRNRERE LSETPSAQSS DRLCQSLSSE LSALQERMTS RRMYRTSGRA YAFSSMSSHS AQRATARGDS
601: TQGFSPVQAY QTSPMARMVT RSQLLVLESP TKPSPGRGEQ S

Arabidopsis Description

T6D22.13 [Source:UniProtKB/TrEMBL;Acc:Q9LN03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.