CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 1
peroxisome 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31616	Canola	nucleus	95.18	94.91
AT4G37890.1	Thale cress	nucleus	80.29	74.42
CDY25618	Canola	nucleus, peroxisome, plastid	61.31	63.44
CDX89500	Canola	cytosol, peroxisome, plastid	62.19	63.3
KRH74431	Soybean	mitochondrion	48.03	48.38
KRH45468	Soybean	cytosol, peroxisome	28.32	48.14
VIT_07s0205g00030.t01	Wine grape	nucleus	45.69	47.71
KRH39527	Soybean	extracellular, golgi	37.66	47.69
PGSC0003DMT400078676	Potato	plastid	48.32	46.55
Solyc02g091710.2.1	Tomato	plastid	48.47	46.24
CDY52535	Canola	plastid	46.42	44.79
CDY08765	Canola	plastid	45.99	44.49
CDY45614	Canola	plastid	45.26	43.54
KRH75634	Soybean	nucleus	41.17	43.52
CDY37838	Canola	plastid	29.78	40.8
CDY28148	Canola	plastid	40.0	40.35
CDY45010	Canola	mitochondrion, peroxisome	40.73	38.32
Os04t0101800-01	Rice	cytosol, mitochondrion, peroxisome, plastid	38.54	38.32
TraesCS2A01G045100.1	Wheat	peroxisome	40.15	36.18
GSMUA_Achr7P01890_001	Banana	mitochondrion	37.66	36.13
GSMUA_Achr5P14740_001	Banana	mitochondrion	36.5	36.13
Zm00001d024940_P001	Maize	peroxisome	38.83	36.09
Zm00001d004553_P001	Maize	peroxisome	39.27	35.87
GSMUA_Achr4P22090_001	Banana	nucleus	37.37	35.8
TraesCS2D01G043700.1	Wheat	peroxisome	39.85	35.78
KRH45469	Soybean	nucleus	9.2	35.59
GSMUA_Achr4P20870_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	37.96	35.52
TraesCS2B01G057300.1	Wheat	peroxisome	39.71	35.32
OQU81040	Sorghum	peroxisome	35.47	33.99
CDY72156	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	22.34	28.39
CDY67781	Canola	cytosol	21.75	28.17
CDY31517	Canola	extracellular, mitochondrion, plastid	23.5	26.92
CDY52708	Canola	extracellular, mitochondrion, plastid	23.21	26.41
CDY32819	Canola	cytosol	22.63	25.66
CDX93597	Canola	cytosol	23.21	24.73
CDX95099	Canola	cytosol	19.56	23.84
CDX91506	Canola	mitochondrion	21.02	23.68
CDX74871	Canola	mitochondrion	20.88	23.44
CDY17702	Canola	mitochondrion	12.26	21.82
CDX77800	Canola	nucleus	15.77	19.01
CDX93598	Canola	endoplasmic reticulum, golgi, mitochondrion, vacuole	0.29	0.52

Protein Annotations

MapMan:26.3.1.6	Gene3D:3.30.40.10	Gene3D:3.40.50.410	GO:A0A078C7A1	EnsemblPlants:CDX72660	ProteinID:CDX72660
ProteinID:CDX72660.1	EnsemblPlantsGene:GSBRNA2T00100229001	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465
PFAM:PF13768	PFAM:PF17123	PFscan:PS50089	PANTHER:PTHR10579	PANTHER:PTHR10579:SF59	SMART:SM00184
SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0004EDC6D8	InterPro:VWF_A	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:	:

Description

BnaC07g46820D

Coordinates

chrLK031796:-:2480256..2482592

Molecular Weight (calculated)

74647.9 Da

IEP (calculated)

10.274

GRAVY (calculated)

-0.381

Length

685 amino acids

Sequence
(BLAST)

001: MMNGLKRTFW ISKHRKTDDR VDDRAKPTSR FGFFSNPSTP KSETRPDSAS PTLRCQRWGA TAVATPSSPS LPDLQCITSG DVTPTATTPR RNGSPLSLLS
101: LSSLSSPKSP ASFSLLKSRL CFNKSNGSRC GICLQSAKAG RGTAIFTAEC SHTFHFPCVA SRAGDLNLLA ACPVCGASWR ETSLLHDLKS PESGSESRTR
201: ESSKKSLRVY NDDEPLISSP ISPAGFNTIL ESDENDDEEE DNGGFKGFFV NTPSPLTSKK RLTDSVDVKL SSEAAVVAVA KGSYETYSVL MKIKSPPLPA
301: SRRRPPVDLV TVLDVGGSKI ETVRRAMRLV ISSLRENDRL SMVSFSSSSK RLSPLRRMTA NGRRVARRIL DDISGDGEGM SVKDAVKKAA KVIEDRRQRN
401: LFATIFVLTD SAHQAQSDFV SSTRVSLLEI PTHTLYLGAC SKVIPEDVFA KRIKGLLSVS VQDLTLQLGL VSGSGQGEIT SVYSLSGRPI WLGSGLIRLG
501: DMYGEEEREV LVELKSPASG KSHRIMTVRS RHVDPTTQET RDSDDRALLI PRPTAVRSSS NANIARLRNV HVSTRAVAES RRLTEASDYS GAERMLTSAR
601: ALLVQYGLSP GDACLRGLDT EIADLNRVRG SRHVAVKSPE PVAQKTEPLT PTSAWRAAER LAKVAIMKKH MNRVSDLHGF ENARF

Best Arabidopsis Sequence Match ( AT4G37890.2 )
(BLAST)

001: MMNGLRRTFW SSIHKKKDNN RVDDSLDRQK PTTTSRFGFF SNPSTPRSET RPDSVTCSPT IPCQSWSATA ISTPSPSLPA SPKLQCDTSG DVTPTRNRSP
101: LSFLSVSSSS STPSSPKSPA SFSLLKSKLC FTKSSISSSK CGICLQSAKA GRGTAIFTAE CSHTFHFPCV ASRAGDRNLL SDCPVCGASW RETSLLPLSL
201: SSSLHESGSE SDSKIRESKN NNKSLRVYND DEPLISSPIS RTGFNTIPES NEDEEEEDND DGEFKGFYVN TPSPLTTKKM LTDSVTGHVD VKLSSEAAIV
301: AVGRGNETYS VLMKIKSPSL PTARRSPVDL VTVIDVSGGN IEMVKRAMRQ VISSLRETDR LSMVSFSSSS KRLTPLRRMT ANGRRLARRI VDDISGDGDG
401: MSVNDAVKKA AKVIEDRRQK NLFTTIFVLT DRNRNSAHQA QLAQPDFVTS TRFSHLEIPT HTIWLGACNH ALPEDVFAKR IKSLLSLSVQ DLTLNLGLVS
501: GSGQGKVTSV YSLSGRPVWL GSGLIRLGDM YGDEEREVLV ELKSPSSSRS QRIMTVRSRH VDPTTQEIKN YEDRALMIPR PTTVRSSDPS IARLRNLHVS
601: TRAVAESRRL VEVNDYSGAE RMLTSARALL VQYGLSSSDS CLRGLEAELA DLNRLRGRHV AVKSPEPVVQ KSEPLTPTSA WRAAERLAKV AIMRKHMNRV
701: SDLHGFENAR F

Arabidopsis Description

EDA40Probable E3 ubiquitin-protein ligase EDA40 [Source:UniProtKB/Swiss-Prot;Acc:F4JSV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.