CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome

Predictor Summary:

plastid 2
peroxisome 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28148	Canola	plastid	90.38	96.91
AT5G49665.1	Thale cress	plastid	82.42	81.08
VIT_18s0001g08100.t01	Wine grape	plastid	56.04	53.9
Solyc04g076860.2.1	Tomato	nucleus	53.71	52.13
PGSC0003DMT400016355	Potato	nucleus	53.3	51.46
KRH72527	Soybean	nucleus	45.6	51.0
KRH16916	Soybean	nucleus	46.84	50.59
CDY25618	Canola	nucleus, peroxisome, plastid	38.74	42.6
CDX89500	Canola	cytosol, peroxisome, plastid	38.74	41.9
Os04t0101800-01	Rice	cytosol, mitochondrion, peroxisome, plastid	38.6	40.78
CDX72660	Canola	cytosol, nucleus, peroxisome, plastid	38.32	40.73
CDY31616	Canola	nucleus	37.77	40.03
GSMUA_Achr5P14740_001	Banana	mitochondrion	37.91	39.88
GSMUA_Achr4P22090_001	Banana	nucleus	38.32	39.02
Zm00001d024940_P001	Maize	peroxisome	39.29	38.81
GSMUA_Achr4P20870_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	39.01	38.8
GSMUA_Achr7P01890_001	Banana	mitochondrion	37.91	38.66
Zm00001d004553_P001	Maize	peroxisome	39.7	38.53
CDY52535	Canola	plastid	37.09	38.03
TraesCS2A01G045100.1	Wheat	peroxisome	39.42	37.76
TraesCS2B01G057300.1	Wheat	peroxisome	39.56	37.4
TraesCS2D01G043700.1	Wheat	peroxisome	39.15	37.35
CDY08765	Canola	plastid	36.13	37.15
CDY45614	Canola	plastid	35.85	36.66
OQU81040	Sorghum	peroxisome	35.44	36.08
CDY37838	Canola	plastid	24.04	35.0
CDY72156	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	22.66	30.61
CDY67781	Canola	cytosol	21.84	30.06
CDY31517	Canola	extracellular, mitochondrion, plastid	24.18	29.43
CDY52708	Canola	extracellular, mitochondrion, plastid	23.76	28.74
CDY32819	Canola	cytosol	22.39	26.99
CDX74871	Canola	mitochondrion	21.84	26.07
CDX91506	Canola	mitochondrion	21.7	25.99
CDX93597	Canola	cytosol	22.8	25.82
CDX95099	Canola	cytosol	19.64	25.44
CDY17702	Canola	mitochondrion	12.5	23.64
CDX77800	Canola	nucleus	15.52	19.89
CDX93598	Canola	endoplasmic reticulum, golgi, mitochondrion, vacuole	0.27	0.52

Protein Annotations

MapMan:26.3.1.6	Gene3D:3.30.40.10	Gene3D:3.40.50.410	GO:A0A078I2E4	UniProt:A0A078I2E4	EnsemblPlants:CDY45010
ProteinID:CDY45010	ProteinID:CDY45010.1	EnsemblPlantsGene:GSBRNA2T00081213001	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083
InterPro:IPR036465	PFAM:PF13519	PFAM:PF17123	PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579
PANTHER:PTHR10579:SF55	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0004EE3CCE
InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:

Description

BnaC02g29430DBnaC02g29430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I2E4]

Coordinates

chrLK032609:+:7232..14681

Molecular Weight (calculated)

79331.9 Da

IEP (calculated)

8.945

GRAVY (calculated)

-0.290

Length

728 amino acids

Sequence
(BLAST)

001: MGTGWRRAFC TTAPRKSDAV APDLDKQQAG YTLNSNPSPR SCVKLAFLSG GSNSLTPRTS YSPSLGCRTT DAENPVPTAE QIPTPRSATK SPRLSLKARS
101: NPSSPRLKLS LFRNSFKFRS NCGICLNNVK TGQGTAKYTA ECSHVFHFPC VTDYVSKHGK LVCPVCNSLW KDASLLTLHG NGIEPPLENA VSIEEKRVVA
201: VATSPIAKPM PKQSHNYDDD EPLLSPRFVT IPEANENCRC EDETDVAQFK GFVVDPSPSF AVKSHEIPAT GRDFGNVQVS LLTESAVVTV GCGYETRAVA
301: LRVKAPPPLG TRGRRLLDPS QRAPVDLVVV VDVGGTMNGA KLQMVKRAMR LVISSLSSAD RLSIVSASSK RLLPLKRMTE NGKRSAGVVV DGLLCCQSSK
401: LSDGLEKAAR VLEDRRERNP IASIVLLKDG QPISSRANTN QRSTITHVGL TRFAHIEIPV TEYGFGESGG CSHAPVEEAF AKCIGGFLSV VVQDLRIQFR
501: VVSGSGPCEI AAIYLCNGQP TLASSGSGSV RLGDLYAGEE RELLVELTIP STASMVHQVL SVRGLYKDPS TREVVYGRDQ SLRVPQAVRS SSPSVERLRS
601: LFIMTQAVAE SRRLVEYGEC TSAHHLLTSA HALLGQSRMA EAADYTKVVE AELVEVQWRR QQLMEYESQP QQQHIQQRRR SERDTTMILV DENGEPLTPA
701: SAWRAAEKLA KVAMMKKSDL HGFENARF

Best Arabidopsis Sequence Match ( AT5G49665.1 )
(BLAST)

001: MGTGWRRAFC TTAPRNSDAA APDLDKQRTG YNLTPSPSPR SCVKLAFLSG GSNPSTPRST SSPSLRCRTA DAQTPTAEQT STPRSATKSP RLSLAAISNP
101: SSPRSPLKLS LFRNSFKFRS TCGICLNSVK TGQGTAKYTA ECSHAFHFPC IADYVRKQGK LVCPVCNSIW KDASLLVPHK NATESPLDDS VSVIQEKRVV
201: VTSSPRAKPR PKQSDYSRFY DDDEPLLSPR FVTIPEADEN CGGEEEDDVP QFKGFVVDPN PSFAVKTNEI PVNGRDFGNV QVSLLPEAAV VSVGCGYETR
301: AVALRVKAPP PLTARGGVGR RLLDPSQRAP VDLVVVVDVG GTMNGAKLQM VKRAMRLVIS SLGSADRLSI VAVVMTVPKR LLPLKRMTEH GKRSAGAVVD
401: GLLCGQGSNT SEALKKASRV LEDRRERNPV ASIVLLTDGQ GQLSKVHTNQ RSTITNVGST RFAHIEIPVT EHGFGESGGC SNAPAEEAFA KCIGGLLSVV
501: VQDLRIQIRV GSGSGPCEIS AIYLCNGRPT LVSSGSGSVR LGDLYAGEER ELLVELRVPS TATRAYQILS VRGLFKDPST QEVVYGRDQS LRVPQAVRSS
601: SSPRIERLRS LFIATRAVAE SRRLVEYGEC TSAYHLLTSA RALLGQSGTV EAAEYIKVVE AELVEVQWRG QQLMEYQSQH QQQHNQRRRG SERETTTTMT
701: LMDENGEPLT PASAWRAAEK LAKLAMMKKS DLHGFENARF

Arabidopsis Description

WAV3E3 ubiquitin-protein ligase WAV3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTA6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.