CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72527	Soybean	nucleus	85.76	88.79
VIT_18s0001g08100.t01	Wine grape	plastid	59.05	52.58
Solyc04g076860.2.1	Tomato	nucleus	56.38	50.67
CDY28148	Canola	plastid	49.7	49.34
PGSC0003DMT400016355	Potato	nucleus	55.04	49.2
AT5G49665.1	Thale cress	plastid	52.67	47.97
KRH45468	Soybean	cytosol, peroxisome	28.19	47.15
Bra040498.1-P	Field mustard	plastid	50.89	47.12
CDY45010	Canola	mitochondrion, peroxisome	50.59	46.84
KRH74431	Soybean	mitochondrion	44.36	43.97
KRH39527	Soybean	extracellular, golgi	34.87	43.44
KRH75634	Soybean	nucleus	38.72	40.28
Os04t0101800-01	Rice	cytosol, mitochondrion, peroxisome, plastid	40.21	39.33
GSMUA_Achr5P14740_001	Banana	mitochondrion	39.61	38.58
GSMUA_Achr7P01890_001	Banana	mitochondrion	39.91	37.68
GSMUA_Achr4P20870_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	40.65	37.43
GSMUA_Achr4P22090_001	Banana	nucleus	39.47	37.2
Zm00001d024940_P001	Maize	peroxisome	40.65	37.18
Zm00001d004553_P001	Maize	peroxisome	40.21	36.13
TraesCS2A01G045100.1	Wheat	peroxisome	39.91	35.39
TraesCS2D01G043700.1	Wheat	peroxisome	40.06	35.39
TraesCS2B01G057300.1	Wheat	peroxisome	39.91	34.94
OQU81040	Sorghum	peroxisome	34.57	32.59
KRH45469	Soybean	nucleus	8.46	32.2
KRH11654	Soybean	nucleus, plastid	18.4	22.42
KRH36665	Soybean	nucleus	18.1	22.18
KRH51230	Soybean	nucleus	16.91	22.01

Protein Annotations

EntrezGene:100795015	MapMan:26.3.1.6	Gene3D:3.30.40.10	Gene3D:3.40.50.410	EMBL:ACUP02009030	ncoils:Coil
EnsemblPlantsGene:GLYMA_14G185600	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	UniProt:K7M7W3
EnsemblPlants:KRH16916	ProteinID:KRH16916	ProteinID:KRH16916.1	PFAM:PF13519	PFAM:PF17123	PFscan:PS50089
PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF55	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300
SUPFAM:SSF57850	UniParc:UPI000233C0CF	InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr14:+:44970892..44973530

Molecular Weight (calculated)

75177.1 Da

IEP (calculated)

8.697

GRAVY (calculated)

-0.525

Length

674 amino acids

Sequence
(BLAST)

001: MGTGWRRAFC TSDPDNSPIR TKDRTLSPTP SPRSCVSLGF LSTPSLHHHH HHHHHHQQPL SSTPKSSTIT EPPNDSPRFQ TKTHKSNPNS PLSPKLNLSL
101: FRNSFKFRNS CGICSNSVKT GQGTAIYTAE CGHAFHFPCV VSHAHIHVCP VCDATWNDVP LLQNDAVVHT EKQNQPSHHH HHRSDSVTSY DDDEPLPSPL
201: TCSTQIAPIP EDEENDDVSE FPGFFVDPKP QSSLRQNNGG DSRSVRVKLM PECPVISVSE SHETRALVLR VKAPPSPPRW RRREPMDLVT VLDVNNSMSG
301: ANFHMLKRAM RLVISSLGPA DRLAVVASSA NSKRLLPLRR MTAQGQRAAR RVVDRLVCDH GNSVGEEAMK KAAKVLEDRR ERNPLVRILL LSDGHDENNN
401: KNQRRFLSHM SSSIRFDCIE VPVHSSGFET KKTGLIHEPL EDDFAQYINR TLSVAVHDLR IQLGFSAPAE IRAVYSCSGG PTALSSNSAR LGDLYAEEEK
501: ELLVEVRVPT SASGTHHVMT VRCVKKDPVS QEFVYGAEHA FTVVPPKSIP ICGGRVERLR NVFITSRAVA ESRRLAKHNE FSSAHHLLAS ARALLTQFGS
601: AEEYVRGLEA ELTELNWRMQ QLRVEREVRL VDESGEVITP TSAWRAAEKL AKMARMKKSL NKVSDLHGFE NARF

Best Arabidopsis Sequence Match ( AT5G49665.1 )
(BLAST)

001: MGTGWRRAFC TTAPRNSDAA APDLDKQRTG YNLTPSPSPR SCVKLAFLSG GSNPSTPRST SSPSLRCRTA DAQTPTAEQT STPRSATKSP RLSLAAISNP
101: SSPRSPLKLS LFRNSFKFRS TCGICLNSVK TGQGTAKYTA ECSHAFHFPC IADYVRKQGK LVCPVCNSIW KDASLLVPHK NATESPLDDS VSVIQEKRVV
201: VTSSPRAKPR PKQSDYSRFY DDDEPLLSPR FVTIPEADEN CGGEEEDDVP QFKGFVVDPN PSFAVKTNEI PVNGRDFGNV QVSLLPEAAV VSVGCGYETR
301: AVALRVKAPP PLTARGGVGR RLLDPSQRAP VDLVVVVDVG GTMNGAKLQM VKRAMRLVIS SLGSADRLSI VAVVMTVPKR LLPLKRMTEH GKRSAGAVVD
401: GLLCGQGSNT SEALKKASRV LEDRRERNPV ASIVLLTDGQ GQLSKVHTNQ RSTITNVGST RFAHIEIPVT EHGFGESGGC SNAPAEEAFA KCIGGLLSVV
501: VQDLRIQIRV GSGSGPCEIS AIYLCNGRPT LVSSGSGSVR LGDLYAGEER ELLVELRVPS TATRAYQILS VRGLFKDPST QEVVYGRDQS LRVPQAVRSS
601: SSPRIERLRS LFIATRAVAE SRRLVEYGEC TSAYHLLTSA RALLGQSGTV EAAEYIKVVE AELVEVQWRG QQLMEYQSQH QQQHNQRRRG SERETTTTMT
701: LMDENGEPLT PASAWRAAEK LAKLAMMKKS DLHGFENARF

Arabidopsis Description

WAV3E3 ubiquitin-protein ligase WAV3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTA6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.