Factsheet for Solyc04g076860.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016355	Potato	nucleus	95.73	95.23
VIT_18s0001g08100.t01	Wine grape	plastid	63.2	62.62
KRH72527	Soybean	nucleus	49.87	57.45
Solyc02g091710.2.1	Tomato	plastid	54.13	56.55
CDY28148	Canola	plastid	51.07	56.41
KRH16916	Soybean	nucleus	50.67	56.38
AT5G49665.1	Thale cress	plastid	55.2	55.95
Bra040498.1-P	Field mustard	plastid	52.53	54.12
CDY45010	Canola	mitochondrion, peroxisome	52.13	53.71
Os04t0101800-01	Rice	cytosol, mitochondrion, peroxisome, plastid	43.6	47.46
Zm00001d024940_P001	Maize	peroxisome	45.87	46.68
GSMUA_Achr7P01890_001	Banana	mitochondrion	43.73	45.94
Zm00001d004553_P001	Maize	peroxisome	45.73	45.73
GSMUA_Achr5P14740_001	Banana	mitochondrion	41.47	44.94
GSMUA_Achr4P22090_001	Banana	nucleus	42.4	44.48
GSMUA_Achr4P20870_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	43.2	44.26
TraesCS2A01G045100.1	Wheat	peroxisome	44.67	44.08
TraesCS2D01G043700.1	Wheat	peroxisome	44.13	43.38
TraesCS2B01G057300.1	Wheat	peroxisome	44.4	43.25
OQU81040	Sorghum	peroxisome	41.07	43.08
Solyc02g032370.1.1	Tomato	endoplasmic reticulum, extracellular	4.67	30.17
Solyc05g056140.2.1	Tomato	nucleus	28.8	29.67
Solyc02g069470.2.1	Tomato	plastid	27.47	29.1
Solyc11g069600.1.1	Tomato	plastid	27.73	28.38
Solyc02g032340.1.1	Tomato	mitochondrion	6.13	27.38
Solyc02g032430.1.1	Tomato	plasma membrane	5.47	24.7
Solyc04g015280.2.1	Tomato	cytosol, nucleus, plastid	15.2	21.43

Protein Annotations

MapMan:26.3.1.6	Gene3D:3.30.40.10	Gene3D:3.40.50.410	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009605	GO:GO:0009606	GO:GO:0009628	GO:GO:0009630	GO:GO:0009987	GO:GO:0016020
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0048364	GO:GO:0061630	InterPro:IPR001841
InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	UniProt:K4BUC4	PFAM:PF13519	PFAM:PF17123
PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF55	SMART:SM00184	SMART:SM00327
SUPFAM:SSF53300	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc04g076860.2	EnsemblPlants:Solyc04g076860.2.1	UniParc:UPI0002766055	InterPro:VWF_A
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

No Description!

Coordinates

chr4:+:61788743..61791563

Molecular Weight (calculated)

83084.9 Da

IEP (calculated)

8.982

GRAVY (calculated)

-0.521

Length

750 amino acids

Sequence
(BLAST)

001: MGTGWRRAFC TTIPRDREPH FVDKDSQQVN NNGGGQQVPS PSPRSCVKLG FLSSSNPSTP RLRCKTNNKA SSNDINTLIS PKLHCKTTPK SNTKSPKTLL
101: GSNPSSPRSP FSILKNTLRL SKHSCGVCTQ SVKSGQGMAI YTAECSHTFH FPCIASHVKK QSNLVCPVCN STWKDVPLLA IHRLQQQENQ KTQKPEEVES
201: YPSTPIRKQE KPLPNVKTYY KPEQCGYNDD EPLFTPTAGA KFVSIPEANE EQDDVEEEIE EFQGFFVNPI SSDEAFANQR DNRSVEVSLM PEAAIVSVGR
301: THETYAVVLK VKAPPPPPSP PAGNSNSGSG HFLDPARRAP IDLVTVLDVS GSMSGAKIQM LKRAMRLVIS SLGSVDRLSI VAFSATPKRL LPLRRMTQQG
401: QRSARRIIDR LVCSQGTCVG EALRKAAKVL EDRRERNPVA SIMLLSDGQD EKIQGSNTHN QRSESTHVSS TRFGHIEIPV HSSGFGKKGG LSHEPAEEDA
501: FSKCVGGLLS VVVQDLKLQL DFSSGSDPAE VAAVYSYNGR PAVLGSSCVR LGDLYAEEER ELLLEVKIPT MTNGSHHVLS VRCCYKDPAT QEAIYGREHS
601: LLVPRPQAVR SSIPKIERLR NLFITTRAIA ESRRLIEHNE LSSAMHLLSS ARALLIQSGS AFVDEYVRGL EAELTEVQWR KQYQQQIEQH KMIQRQRTNE
701: REMNLFLDEN GEPLTPTSAW RAAEKLAKVA MMKKSMNRVS DLHGFENARF

Best Arabidopsis Sequence Match ( AT5G49665.1 )
(BLAST)

001: MGTGWRRAFC TTAPRNSDAA APDLDKQRTG YNLTPSPSPR SCVKLAFLSG GSNPSTPRST SSPSLRCRTA DAQTPTAEQT STPRSATKSP RLSLAAISNP
101: SSPRSPLKLS LFRNSFKFRS TCGICLNSVK TGQGTAKYTA ECSHAFHFPC IADYVRKQGK LVCPVCNSIW KDASLLVPHK NATESPLDDS VSVIQEKRVV
201: VTSSPRAKPR PKQSDYSRFY DDDEPLLSPR FVTIPEADEN CGGEEEDDVP QFKGFVVDPN PSFAVKTNEI PVNGRDFGNV QVSLLPEAAV VSVGCGYETR
301: AVALRVKAPP PLTARGGVGR RLLDPSQRAP VDLVVVVDVG GTMNGAKLQM VKRAMRLVIS SLGSADRLSI VAVVMTVPKR LLPLKRMTEH GKRSAGAVVD
401: GLLCGQGSNT SEALKKASRV LEDRRERNPV ASIVLLTDGQ GQLSKVHTNQ RSTITNVGST RFAHIEIPVT EHGFGESGGC SNAPAEEAFA KCIGGLLSVV
501: VQDLRIQIRV GSGSGPCEIS AIYLCNGRPT LVSSGSGSVR LGDLYAGEER ELLVELRVPS TATRAYQILS VRGLFKDPST QEVVYGRDQS LRVPQAVRSS
601: SSPRIERLRS LFIATRAVAE SRRLVEYGEC TSAYHLLTSA RALLGQSGTV EAAEYIKVVE AELVEVQWRG QQLMEYQSQH QQQHNQRRRG SERETTTTMT
701: LMDENGEPLT PASAWRAAEK LAKLAMMKKS DLHGFENARF

Arabidopsis Description

WAV3E3 ubiquitin-protein ligase WAV3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTA6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.