Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400070011 | Potato | nucleus | 96.43 | 96.79 |
| VIT_00s0475g00020.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 55.64 | 57.14 |
| KRH36665 | Soybean | nucleus | 58.46 | 56.55 |
| KRH11654 | Soybean | nucleus, plastid | 58.27 | 56.06 |
| KRH51230 | Soybean | nucleus | 54.14 | 55.6 |
| TraesCS5B01G176000.2 | Wheat | mitochondrion | 46.8 | 47.25 |
| TraesCS5A01G178300.1 | Wheat | mitochondrion | 46.8 | 47.25 |
| Os09t0298500-01 | Rice | nucleus | 47.18 | 47.18 |
| Zm00001d020013_P001 | Maize | cytosol | 45.86 | 46.39 |
| GSMUA_Achr9P22360_001 | Banana | plastid | 34.77 | 45.68 |
| TraesCS5D01G182800.1 | Wheat | cytosol, plastid | 46.99 | 44.01 |
| CDY17702 | Canola | mitochondrion | 31.58 | 43.64 |
| Bra024913.1-P | Field mustard | mitochondrion | 42.67 | 43.49 |
| OQU89212 | Sorghum | cytosol | 44.92 | 42.75 |
| CDX77800 | Canola | nucleus | 42.29 | 39.61 |
| Solyc02g032370.1.1 | Tomato | endoplasmic reticulum, extracellular | 6.2 | 28.45 |
| Solyc02g032430.1.1 | Tomato | plasma membrane | 7.14 | 22.89 |
| Solyc02g032340.1.1 | Tomato | mitochondrion | 7.14 | 22.62 |
| Solyc11g069600.1.1 | Tomato | plastid | 24.44 | 17.74 |
| Solyc05g056140.2.1 | Tomato | nucleus | 24.25 | 17.72 |
| Solyc02g069470.2.1 | Tomato | plastid | 23.12 | 17.37 |
| Solyc02g091710.2.1 | Tomato | plastid | 20.86 | 15.46 |
| Solyc04g076860.2.1 | Tomato | nucleus | 21.43 | 15.2 |
Protein Annotations
| Gene3D:3.30.40.10 | Gene3D:3.40.50.410 | MapMan:35.1 | InterPro:IPR001841 | InterPro:IPR002035 | InterPro:IPR013083 |
| InterPro:IPR036465 | UniProt:K4BQ31 | PFAM:PF13519 | PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR10579 |
| PANTHER:PTHR10579:SF47 | SMART:SM00184 | SUPFAM:SSF53300 | SUPFAM:SSF57850 | EnsemblPlantsGene:Solyc04g015280.2 | EnsemblPlants:Solyc04g015280.2.1 |
| UniParc:UPI00027669D5 | InterPro:VWF_A | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | InterPro:vWFA_dom_sf |
Description
No Description!
Coordinates
chr4:+:5484893..5488972
Molecular Weight (calculated)
59640.0 Da
IEP (calculated)
8.230
GRAVY (calculated)
-0.330
Length
532 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIFAGESSS YSGRLKRVAK KILLQTCGSF RCGYQNPPDD EPHNNNNNNN NPSEFPYPVN NLELLNHTSV IKSSRLDSTT NTPSNKNFCP ICLDSLSYSC
101: DSSPGQAIFT AQCSHAFHFA CISSNIRHGN VTCPVCRAHW TQLPRTLKMH YSPHSNRADP ILQILDESIA TSRVHRRSFL RSARYDDDDP VEPDRTSNIH
201: RLHLSLSPVP HSTSVFDPCS NPKSSFSSCH YPQHCLESSQ SAAQHFVETG QSPLVCSSSS SAYLCLKLAH QPATDLVLVA SPNGPHLRLM KQAMAFVVFS
301: LRPIDRLAIV TYSSAAARIF PLKCMTSYGK RTALQVIDRL FYMGQADPVE GLKKGVKILR ERSHQNTHSF ILHLSDNPTR SFHGFHLELP ITIHKFHVGF
401: GFGTSNGFVM HEFERFLAKI LCGAVRDIAL MIGEDTRIVR LGELRGGEER RIPLLLEDMD KVRVVYTYID CMMDDSVKTG EVVVGVGDRK ELTDTIDIVE
501: NTGGRSSSVE GWEYHDPFMA RRWAKRLHGY RI
101: DSSPGQAIFT AQCSHAFHFA CISSNIRHGN VTCPVCRAHW TQLPRTLKMH YSPHSNRADP ILQILDESIA TSRVHRRSFL RSARYDDDDP VEPDRTSNIH
201: RLHLSLSPVP HSTSVFDPCS NPKSSFSSCH YPQHCLESSQ SAAQHFVETG QSPLVCSSSS SAYLCLKLAH QPATDLVLVA SPNGPHLRLM KQAMAFVVFS
301: LRPIDRLAIV TYSSAAARIF PLKCMTSYGK RTALQVIDRL FYMGQADPVE GLKKGVKILR ERSHQNTHSF ILHLSDNPTR SFHGFHLELP ITIHKFHVGF
401: GFGTSNGFVM HEFERFLAKI LCGAVRDIAL MIGEDTRIVR LGELRGGEER RIPLLLEDMD KVRVVYTYID CMMDDSVKTG EVVVGVGDRK ELTDTIDIVE
501: NTGGRSSSVE GWEYHDPFMA RRWAKRLHGY RI
001: MGTRWRRMKL ALGLNLCTYL PRTLEESPTP LNSTERLSDV ALLSPLNWPM TPTPSSHGLK LSRNSSKSSK TCSICLNKMK EGGGHALFTA ECSHSFHFHC
101: IASNVKHGNQ VCPVCRAKWK EIPMQHPSFD LPYLFARSYN NDAAISLVHR LPRSRGVMNQ GRGLAPEPSM FDDDERLEQQ LVFSGKSYSD ALENNHPVRM
201: MDLKIYPEVS AVPRADSREK FDVLVHLRAA AMVTGNANSL NNQISRYPRA PVDLVTVLDI SGSMAGTKLA LLKRAMGFVI QNLGSNDRLS VIAFSSTARR
301: LFPLTKMSDA GRQRALQAVN SVVANGGTNI AEGLRKGVKV MEDRRDKNPV ASIILLSDGR DTYTMNQADP NYKLLLPLSM HGCESKRFQI PVHSFGFGSD
401: HDASLMHSVS ETSGGTFSFI ESESVIQDAL AQCIGGLLSV AVQELRLEIE GMCSDVHLSS IKAGSYQSLV SGDGRSGCVD IGDLYADEER DFLISVNIPP
501: QKDGNETPLL KMRCVYKDLL TKEIVTLQSH MLKIQRPETV GQEVVVSIEV DRQRNRFLAA EAMVKARALA EREDLAAGVT AIQNFRVALA ETVSAKSGDG
601: FCVALDRELK EMQERMASRH VYEVSGRAYI LSGLSSHSWQ RATSRGESGD GSSFVQAYYQ TPSMVEMLHR SQATSHHHRL IQPLFASQPK PR
101: IASNVKHGNQ VCPVCRAKWK EIPMQHPSFD LPYLFARSYN NDAAISLVHR LPRSRGVMNQ GRGLAPEPSM FDDDERLEQQ LVFSGKSYSD ALENNHPVRM
201: MDLKIYPEVS AVPRADSREK FDVLVHLRAA AMVTGNANSL NNQISRYPRA PVDLVTVLDI SGSMAGTKLA LLKRAMGFVI QNLGSNDRLS VIAFSSTARR
301: LFPLTKMSDA GRQRALQAVN SVVANGGTNI AEGLRKGVKV MEDRRDKNPV ASIILLSDGR DTYTMNQADP NYKLLLPLSM HGCESKRFQI PVHSFGFGSD
401: HDASLMHSVS ETSGGTFSFI ESESVIQDAL AQCIGGLLSV AVQELRLEIE GMCSDVHLSS IKAGSYQSLV SGDGRSGCVD IGDLYADEER DFLISVNIPP
501: QKDGNETPLL KMRCVYKDLL TKEIVTLQSH MLKIQRPETV GQEVVVSIEV DRQRNRFLAA EAMVKARALA EREDLAAGVT AIQNFRVALA ETVSAKSGDG
601: FCVALDRELK EMQERMASRH VYEVSGRAYI LSGLSSHSWQ RATSRGESGD GSSFVQAYYQ TPSMVEMLHR SQATSHHHRL IQPLFASQPK PR
Arabidopsis Description
Zinc finger (C3HC4-type RING finger) family protein [Source:UniProtKB/TrEMBL;Acc:F4IU12]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.