CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024913.1-P	Field mustard	mitochondrion	86.27	93.87
CDY17702	Canola	mitochondrion	57.57	84.94
VIT_00s0475g00020.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	45.77	50.19
KRH11654	Soybean	nucleus, plastid	46.83	48.1
KRH36665	Soybean	nucleus	46.3	47.82
KRH51230	Soybean	nucleus	41.02	44.98
Os09t0298500-01	Rice	nucleus	41.02	43.8
Zm00001d020013_P001	Maize	cytosol	40.14	43.35
PGSC0003DMT400070011	Potato	nucleus	40.14	43.02
TraesCS5A01G178300.1	Wheat	mitochondrion	39.61	42.69
TraesCS5B01G176000.2	Wheat	mitochondrion	39.44	42.5
Solyc04g015280.2.1	Tomato	cytosol, nucleus, plastid	39.61	42.29
TraesCS5D01G182800.1	Wheat	cytosol, plastid	40.14	40.14
OQU89212	Sorghum	cytosol	39.26	39.89
GSMUA_Achr9P22360_001	Banana	plastid	27.29	38.27
CDY67781	Canola	cytosol	18.31	19.66
CDY72156	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	18.49	19.48
CDY37838	Canola	plastid	16.2	18.4
CDY32819	Canola	cytosol	19.19	18.05
CDY31517	Canola	extracellular, mitochondrion, plastid	18.49	17.56
CDX93597	Canola	cytosol	19.72	17.42
CDX74871	Canola	mitochondrion	18.66	17.38
CDX91506	Canola	mitochondrion	18.49	17.27
CDY08765	Canola	plastid	21.13	16.95
CDY52708	Canola	extracellular, mitochondrion, plastid	17.96	16.94
CDY45614	Canola	plastid	21.13	16.85
CDY28148	Canola	plastid	20.07	16.79
CDX89500	Canola	cytosol, peroxisome, plastid	19.37	16.34
CDY52535	Canola	plastid	20.42	16.34
CDY31616	Canola	nucleus	19.54	16.16
CDY25618	Canola	nucleus, peroxisome, plastid	18.66	16.01
CDX72660	Canola	cytosol, nucleus, peroxisome, plastid	19.01	15.77
CDY45010	Canola	mitochondrion, peroxisome	19.89	15.52
CDX95099	Canola	cytosol	15.14	15.3
CDX93598	Canola	endoplasmic reticulum, golgi, mitochondrion, vacuole	0.7	1.04

Protein Annotations

EnsemblPlants:CDX77800	EnsemblPlantsGene:GSBRNA2T00128841001	Gene3D:3.30.40.10	Gene3D:3.40.50.410	GO:A0A078CLL0	InterPro:IPR001841
InterPro:IPR013083	InterPro:IPR036465	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:vWFA_dom_sf	PANTHER:PTHR10579
PANTHER:PTHR10579:SF47	PFAM:PF13639	PFscan:PS50089	ProteinID:CDX77800	ProteinID:CDX77800.1	SEG:seg
SMART:SM00184	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0004EE1E0E	MapMan:35.1	:

Description

BnaC07g20540D

Coordinates

chrLK031812:+:1881441..1883689

Molecular Weight (calculated)

63099.0 Da

IEP (calculated)

7.051

GRAVY (calculated)

-0.267

Length

568 amino acids

Sequence
(BLAST)

001: MDWLSKEEGD ASEMGNCILL SKEVSHWPIF KVQTVEHPLS VRDSLSSLFC LSPHGNGKNN FEAEEGRKET GLSCLSFSFS SSSAVMKPEN VYLPHHHEVH
101: EEAIDKADST HATSTILCAI CLEPLSHCDD NSPSEATFTG QCSHSFHFSC IASNVRHGSV TCPVCRAHWT HLPPPSFPHL SERQLDDPVL RILDDSIATS
201: RVQRRSLLRS ARYDDDDPIA PPHSNTSYSR LDFSLTPLTV SPNLVSYPCC FQPLQGAYSP LQMCRRSVLP LPEDYHCVCT SLGTRSAYLS VKLKDPQPID
301: LVLVASPSGP HSRLLKQAMI LVTSSLRPVD RLAIVTYSCV AARVFALRRM TSCGKRAALR VIDRLFYTGQ TDPSQGILKG IKVLKDRAYK NPQCSILHIS
401: SSSYYPNSVM HRGVMVHGFH VGLGSETWNG FVLHKLEEFL KNVLGVVASD IQLRIGMEGN VVKVGELRGG EERQVLLDLG GHVSVRLCYS YVEGDSNECI
501: RRRGETTLSL VDDKEGIVTG DCESAGARDD DYMNSNSVRR SINTGAWDYH DPFMARRWAK RLHETVNL

Best Arabidopsis Sequence Match ( AT2G38970.1 )
(BLAST)

001: MGTRWRRMKL ALGLNLCTYL PRTLEESPTP LNSTERLSDV ALLSPLNWPM TPTPSSHGLK LSRNSSKSSK TCSICLNKMK EGGGHALFTA ECSHSFHFHC
101: IASNVKHGNQ VCPVCRAKWK EIPMQHPSFD LPYLFARSYN NDAAISLVHR LPRSRGVMNQ GRGLAPEPSM FDDDERLEQQ LVFSGKSYSD ALENNHPVRM
201: MDLKIYPEVS AVPRADSREK FDVLVHLRAA AMVTGNANSL NNQISRYPRA PVDLVTVLDI SGSMAGTKLA LLKRAMGFVI QNLGSNDRLS VIAFSSTARR
301: LFPLTKMSDA GRQRALQAVN SVVANGGTNI AEGLRKGVKV MEDRRDKNPV ASIILLSDGR DTYTMNQADP NYKLLLPLSM HGCESKRFQI PVHSFGFGSD
401: HDASLMHSVS ETSGGTFSFI ESESVIQDAL AQCIGGLLSV AVQELRLEIE GMCSDVHLSS IKAGSYQSLV SGDGRSGCVD IGDLYADEER DFLISVNIPP
501: QKDGNETPLL KMRCVYKDLL TKEIVTLQSH MLKIQRPETV GQEVVVSIEV DRQRNRFLAA EAMVKARALA EREDLAAGVT AIQNFRVALA ETVSAKSGDG
601: FCVALDRELK EMQERMASRH VYEVSGRAYI LSGLSSHSWQ RATSRGESGD GSSFVQAYYQ TPSMVEMLHR SQATSHHHRL IQPLFASQPK PR

Arabidopsis Description

Zinc finger (C3HC4-type RING finger) family protein [Source:UniProtKB/TrEMBL;Acc:F4IU12]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.