Factsheet for TraesCS5D01G182800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G178300.1	Wheat	mitochondrion	92.25	99.43
TraesCS5B01G176000.2	Wheat	mitochondrion	92.08	99.24
Os09t0298500-01	Rice	nucleus	83.27	88.91
Zm00001d020013_P001	Maize	cytosol	78.35	84.6
OQU89212	Sorghum	cytosol	75.7	76.92
VIT_00s0475g00020.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	47.71	52.32
KRH11654	Soybean	nucleus, plastid	47.89	49.19
KRH36665	Soybean	nucleus	47.54	49.09
KRH51230	Soybean	nucleus	44.01	48.26
GSMUA_Achr9P22360_001	Banana	plastid	33.98	47.65
Solyc04g015280.2.1	Tomato	cytosol, nucleus, plastid	44.01	46.99
PGSC0003DMT400070011	Potato	nucleus	43.66	46.79
Bra024913.1-P	Field mustard	mitochondrion	40.67	44.25
CDY17702	Canola	mitochondrion	28.52	42.08
CDX77800	Canola	nucleus	40.14	40.14
TraesCS4D01G339200.1	Wheat	mitochondrion	22.89	18.39
TraesCS6D01G207700.2	Wheat	mitochondrion	22.36	17.89
TraesCS2D01G357400.1	Wheat	cytosol, nucleus, peroxisome	20.25	17.8
TraesCS2D01G361900.1	Wheat	mitochondrion	21.3	17.49
TraesCS5D01G348200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	17.43	17.43
TraesCS1D01G433500.1	Wheat	cytosol	17.78	17.15
TraesCS1D01G144900.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome, plastid	20.25	16.84
TraesCS5D01G472700.1	Wheat	cytosol	17.78	16.83
TraesCS2D01G043700.1	Wheat	peroxisome	22.18	16.51
TraesCS6D01G360000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	21.3	16.4
TraesCS4D01G339300.1	Wheat	cytosol	21.48	16.29
TraesCS5D01G016400.1	Wheat	cytosol	12.85	15.08
TraesCS5D01G016600.1	Wheat	cytosol	12.85	13.96
TraesCS2D01G459400.1	Wheat	mitochondrion	12.5	13.55
TraesCS7D01G434400.1	Wheat	cytosol	12.32	13.44
TraesCS7D01G010200.1	Wheat	cytosol	11.8	12.79
TraesCS4D01G351600.1	Wheat	plastid	12.68	12.7
TraesCS3D01G516600.1	Wheat	cytosol	11.62	12.64
TraesCS6D01G009300.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	13.03	10.0
TraesCS7D01G418800.1	Wheat	cytosol, peroxisome, plasma membrane	11.97	9.34
TraesCS5D01G016700.1	Wheat	mitochondrion	10.92	7.22

Protein Annotations

EnsemblPlants:TraesCS5D01G182800.1	EnsemblPlantsGene:TraesCS5D01G182800	Gene3D:3.30.40.10	Gene3D:3.40.50.410	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001841	InterPro:IPR013083	InterPro:IPR036465	InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:vWFA_dom_sf	PANTHER:PTHR10579	PANTHER:PTHR10579:SF47	PFAM:PF00097	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF53300	SUPFAM:SSF57850	MapMan:35.1	:

Description

No Description!

Coordinates

chr5D:-:284110757..284115866

Molecular Weight (calculated)

62083.2 Da

IEP (calculated)

8.682

GRAVY (calculated)

-0.312

Length

568 amino acids

Sequence
(BLAST)

001: MEYKNHKAAK AGAFTPPPRT RTARNRAGQG LWRCSSGGQR AMAGGCGGEG TLARWRRAAA KRIGLSCASF FSSHAASPSP PPPKTISCSA VNAPADSSDG
101: EQEKLEEPTS TRMADKNFCA ICLETLSTSS SGIDNCDRPA IFTAQCSHSF HFLCIASNIR HGNVTCPICR AQWSQLPRDL KVPPLLHNQS DPILRILDDN
201: IATSRVNRRS SIRATRYNDD DPVEPYTLTE HVDPCLRFAL IPSPVAAHHH ALGHYPCGRM MPPQQHCQYS YSGSSMVSPP QIASPSVQRR AYLSVSLAPQ
301: PAMDLVLVAS PNGPHLRLLK QAVALVVFSM RAIDRLAIVT NATTATRAFP LRRMSSHGKR MALQVIEHLC SVGGIDPVGA LQKGLKILED RAHQNPSNCI
401: LHLSDHPIRS YAGVDMNRAS IPVHQFHVGL GFGVQNSFVM HEFEELLARL LGGVIGDTHL RIGEHGGVVR LGELRGGEER RIPLDLVADC GFILVGYSYL
501: EGGREDRSRT GEVAVGFEEK SDSRYCGGRD MGTSIGGERR SSCCAESWDH LDPFMARRWA KHFNVYRS

Best Arabidopsis Sequence Match ( AT3G54780.1 )
(BLAST)

001: MVSKWKKMKL ALSLNLCNYL PRTLEEEPPS LALNSAETLS DAALLSPLNW PMTPTPSSYR RRLSRSSSKS SKTCSICLNK MKEGCGHAIF TAECSHMFHF
101: HCIASNVKHG NQVCPVCRAK WKEIPIQKPS LDLPYYPFDR CNNDAAISLF RCLPPSQRAI TQGHPEPATF DDDERLEEQI VFDGETEVLK KENRDYVRMM
201: DMKVYPEVSA VPQSKSCENF DVLVHLKAVT GDQISQYRRA PIDLVTVLDI SGSMGGTKLA LLKRAMGFVI QNLGSSDRLS VIAFSSTARR LFPLTRMSDA
301: GRQLALQAVN SLVANGGTNI VDGLRKGAKV MEDRLERNSV ASIILLSDGR DTYTTNHPDP SYKVMLPQIS VHSFGFGSDH DASVMHSVSE VSGGTFSFIE
401: SESVIQDALA QCIGGLLSVA VQELRVEIEG VSPNVRLSSI KAGSYSSLVT GDGHSGLVDL GDLYADEERD FLVSINIPVE EDGHTPLLKL RCLYINPLTK
501: EITTLESHVL QIRRPEYVAE EKVVPIEVVR QRNRFLAAEA MAQARTLAEH GDLEAAVKAI ENFRLVLAET VAAKSCDRFC VALDSELKEM QGRMRSSHMY
601: EASGRAYILS GLSSHSWQRA TARGNSRDSS SFVQAYQTPS MAEMLRRSQA MFLVSPSHHR LIQPLLSFAS QPKPR

Arabidopsis Description

Zinc finger (C3HC4-type RING finger) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LN98]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.