Factsheet for TraesCS5D01G016400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G009400.1	Wheat	cytosol	90.7	91.84
TraesCS5A01G011500.1	Wheat	cytosol	91.74	88.8
HORVU5Hr1G001270.2	Barley	cytosol	60.54	81.62
TraesCS5D01G016600.1	Wheat	cytosol	85.95	79.54
Os12t0431700-00	Rice	cytosol	28.72	67.15
HORVU0Hr1G036570.1	Barley	mitochondrion	52.27	66.23
TraesCS7D01G010200.1	Wheat	cytosol	59.3	54.77
TraesCS3D01G516600.1	Wheat	cytosol	54.55	50.57
TraesCS7D01G434400.1	Wheat	cytosol	54.13	50.29
Zm00001d024886_P002	Maize	cytosol	41.32	38.76
Zm00001d024014_P001	Maize	cytosol	39.67	38.17
KXG20893	Sorghum	cytosol, plastid	43.8	34.7
TraesCS7D01G418800.1	Wheat	cytosol, peroxisome, plasma membrane	35.33	23.49
TraesCS6D01G009300.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	34.92	22.84
TraesCS5D01G348200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	26.03	22.18
TraesCS2D01G459400.1	Wheat	mitochondrion	23.35	21.56
TraesCS5D01G472700.1	Wheat	cytosol	26.65	21.5
TraesCS1D01G433500.1	Wheat	cytosol	25.41	20.88
TraesCS4D01G351600.1	Wheat	plastid	23.14	19.75
TraesCS2D01G357400.1	Wheat	cytosol, nucleus, peroxisome	26.24	19.66
TraesCS1D01G144900.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome, plastid	27.27	19.33
TraesCS4D01G339200.1	Wheat	mitochondrion	27.89	19.09
TraesCS4D01G339300.1	Wheat	cytosol	28.93	18.69
TraesCS2D01G361900.1	Wheat	mitochondrion	26.45	18.5
TraesCS6D01G207700.2	Wheat	mitochondrion	27.07	18.45
TraesCS6D01G360000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	25.83	16.94
TraesCS5D01G016700.1	Wheat	mitochondrion	23.35	13.15
TraesCS5D01G182800.1	Wheat	cytosol, plastid	15.08	12.85
TraesCS2D01G043700.1	Wheat	peroxisome	20.25	12.84

Protein Annotations

EnsemblPlants:TraesCS5D01G016400.1	EnsemblPlantsGene:TraesCS5D01G016400	Gene3D:3.40.50.410	InterPro:IPR002035	InterPro:IPR036465	InterPro:VWF_A
InterPro:Vwaint_dom	InterPro:vWFA_dom_sf	ncoils:Coil	PANTHER:PTHR10579	PANTHER:PTHR10579:SF64	PFAM:PF13768
PFAM:PF14624	PFscan:PS50234	SEG:seg	SMART:SM00327	SUPFAM:SSF53300	MapMan:35.2

Description

No Description!

Coordinates

chr5D:-:9385704..9387410

Molecular Weight (calculated)

52187.5 Da

IEP (calculated)

4.400

GRAVY (calculated)

-0.281

Length

484 amino acids

Sequence
(BLAST)

001: MASFGDDEKP PSPNAGSKDG LVTMAIPAYN RKDVGLTKDT LTAMVEIRAT SSAAMREGLD LVAVLDVSGH KIESVKKALQ FVIMKLTPVD RLSIVTFDST
101: ARRLTPLRCM TQAAQTDLKA VVDGLQNGGG TDIMAGLELG LAVLRGRVHT ESRTANVFLM SDRQTTSGDP REVDPGEVAV YTFGFGAGTD HKLLSDLANK
201: STGGTYSAVP DGTNLSAPFS QLLGGLLTVV AQDVQLTLEP NTADGDLEKM TVAPGTDYTT ITDDKSGLIT IKFGSLFSGE ARKVAVNFTL RDSDETEEYD
301: ATLAEARHIY AGQKTRQSLE AILIVRTPNP SSPADAGAVE NRSMLAEEVR RLHADTINAA SLLAEAERLE EAREKIVDAQ NAMEDIVLLD DGENMVNALR
401: TELLQLLTFM ESQELYNERG HPYALATVTS HGRQRTAARG DEGEVISLYA TPRMTAYLEQ AKSFEENPKE PVPTADDDVE EEIS

Best Arabidopsis Sequence Match ( AT5G60710.1 )
(BLAST)

001: MGSKWRKAKV ALGLNLCLYV PKTLEDSSPP RRSDDAVSLS PVIVQRPSTP TPSSSGLRLP RSMSKSSSKK TCAICLTAMK AGQGHAIFTA ECSHSFHFQC
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR

Arabidopsis Description

Retroelement pol polyprotein-like [Source:UniProtKB/TrEMBL;Acc:Q9FF49]
SUBAcon: [mitochondrion,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.