Factsheet for Zm00001d024014_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024886_P002	Maize	cytosol	96.02	93.6
EES11757	Sorghum	cytosol	86.08	83.43
EES05180	Sorghum	mitochondrion	58.25	79.4
KXG38506	Sorghum	cytosol	52.09	77.51
Os03t0403600-01	Rice	cytosol, extracellular	41.35	50.0
TraesCS4A01G484700.1	Wheat	cytosol, unclear	47.51	45.61
TraesCS7A01G010300.1	Wheat	nucleus, unclear	47.32	45.42
TraesCS7D01G010200.1	Wheat	cytosol	47.12	45.23
HORVU7Hr1G001030.5	Barley	cytosol	46.92	44.95
TraesCS3D01G516600.1	Wheat	cytosol	42.74	41.19
TraesCS2B01G026900.1	Wheat	cytosol	48.11	40.4
TraesCS7D01G434400.1	Wheat	cytosol	41.75	40.31
TraesCS5D01G016400.1	Wheat	cytosol	38.17	39.67
TraesCS5D01G016600.1	Wheat	cytosol	40.56	39.01
HORVU5Hr1G070100.1	Barley	cytosol	40.56	38.86
HORVU5Hr1G001450.1	Barley	cytosol	40.56	38.86
TraesCS5A01G011500.1	Wheat	cytosol	38.57	38.8
TraesCS5A01G011700.1	Wheat	cytosol	40.16	38.4
HORVU5Hr1G001270.2	Barley	cytosol	26.64	37.33
Os01t0640200-00	Rice	cytosol	44.53	35.78
Os12t0431700-00	Rice	cytosol	14.71	35.75
HORVU0Hr1G036570.1	Barley	mitochondrion	25.84	34.03
Zm00001d051773_P001	Maize	plasma membrane	26.44	28.98
TraesCS6B01G057500.1	Wheat	cytosol	28.83	28.77
TraesCS7D01G418800.1	Wheat	cytosol, peroxisome, plasma membrane	40.95	28.3
HORVU7Hr1G098290.1	Barley	cytosol, peroxisome, plasma membrane	39.96	27.92
TraesCS7A01G426800.1	Wheat	cytosol, peroxisome, plasma membrane	39.96	27.72
TraesCS6A01G006500.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	38.97	27.72
Zm00001d007190_P001	Maize	cytosol	27.44	27.54
Zm00001d008553_P001	Maize	cytosol	27.24	27.45
TraesCS6D01G009300.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	39.96	27.16
Zm00001d032750_P001	Maize	plastid	28.23	22.61
Zm00001d032753_P001	Maize	cytosol	27.24	21.34
Zm00001d051119_P001	Maize	nucleus	28.43	20.78
Zm00001d014084_P001	Maize	mitochondrion	28.23	20.2
Zm00001d036068_P001	Maize	mitochondrion, plastid	22.07	20.15
Zm00001d017247_P002	Maize	mitochondrion	27.44	19.83
Zm00001d027622_P001	Maize	mitochondrion	27.24	19.8
Zm00001d025825_P001	Maize	mitochondrion	27.04	19.32
Zm00001d018428_P001	Maize	mitochondrion	28.03	19.08
Zm00001d036069_P001	Maize	endoplasmic reticulum, extracellular, vacuole	23.66	18.86
Zm00001d027621_P001	Maize	cytosol	28.03	18.85
Zm00001d036072_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	23.46	18.73
Zm00001d045454_P001	Maize	plasma membrane	24.06	18.62
Zm00001d051977_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	27.04	18.6
Zm00001d045456_P001	Maize	endoplasmic reticulum, plasma membrane	22.07	18.44
Zm00001d035434_P001	Maize	cytosol	16.1	17.65
Zm00001d036066_P001	Maize	cytosol	23.26	17.59
Zm00001d035428_P001	Maize	mitochondrion	21.47	16.1
HORVU0Hr1G022100.1	Barley	cytosol	20.68	14.46
Zm00001d020013_P001	Maize	cytosol	14.31	13.69
Zm00001d024940_P001	Maize	peroxisome	19.48	13.3
Zm00001d004553_P001	Maize	peroxisome	19.48	13.07

Protein Annotations

EnsemblPlants:Zm00001d024014_P001	EnsemblPlants:Zm00001d024014_T001	EnsemblPlantsGene:Zm00001d024014	Gene3D:3.40.50.410	InterPro:IPR002035	InterPro:IPR036465
InterPro:VWF_A	InterPro:Vwaint_dom	InterPro:vWFA_dom_sf	ncoils:Coil	PANTHER:PTHR10579	PANTHER:PTHR10579:SF64
PFAM:PF00092	PFAM:PF14624	PFscan:PS50234	ProteinID:AQK40550.1	SEG:seg	SMART:SM00327
SUPFAM:SSF53300	UniParc:UPI000221AB42	UniProt:K7TP80	MapMan:35.2	:	:

Description

Zinc finger (C3HC4-type RING finger) family protein

Coordinates

chr10:+:36972441..36982464

Molecular Weight (calculated)

54783.4 Da

IEP (calculated)

4.878

GRAVY (calculated)

-0.289

Length

503 amino acids

Sequence
(BLAST)

001: MQGRGRRRSC PERVQLVSKN NNMAPLEENT QKVLLELTGD DSTSDRSGLD LVAVLDVSSS MQGEKIEKMK TAMKFVVKKL SSIDRLSIVT FLDTANRICP
101: LRQVTEDSQP QLLKLIDALQ PGGNTNISDG LQTGLKVLAD RKLSSGRVVG VMLMSDGQQN RGEPAANVKI GNVPVYTFGF GAHYDPTVLN VVARNSMGGT
201: FSVVNDVNLL SMAFSQCLAG LLTVVVQDLT LTVARIEDES TIQKVAAGNY LQTPDADAGS VTVAFGDLYS KEVRKVIFDL LLPAIDSDRG ADILEVTYSY
301: KTAGKLFDAP PATVTVRRSG TAFPADDPPV DVQTEEARLK TATMIQQART MADGKKLGDA RDKLAEAQNA LENVVAQSDP LLDALRTELQ ELLKLMKSQE
401: VYEKQGRPYA MSSETSHDRQ RFAARGDIEN NRLFSTPRMD KYLEQAKKFD EDPAAPLPSA DKDEEEEVAA NPLAPLVGPI TFYIRAAVEA LQAIEKLINK
501: GAN

Best Arabidopsis Sequence Match ( AT1G08050.1 )
(BLAST)

001: MENPNNLRES KSHLNLNECL TLPKTLDPSS PSPSDASRSS VDPNRPDSSS SRPGSTPSSS GLRFSKGRCA ICLYEIRKED GKAIFTAECS HSFHFDCITS
101: NVKHGNRICP LCRTQWKQVP LCDVDSVPTF VAQRGFEDDE PLPQGDTQIH SDGHRSDHQA LEIKLFPEVS ALAKPVSRAD FAVLVHLKAE GVSDDARRAR
201: APLDLITVLD VSGSMDGVKM ELMKNAMSFV IQNLGETDRL SVISFSSMAR RLFPLRLMSE TGKQAAMQAV NSLVADGGTN IAEGLKIGAR VIEGRRWKNP
301: VSGMMLLSDG QDNFTFSHAG VRLRTDYESL LPSSCRIPIH TFGFGSDHDA ELMHTISEVS SGTFSFIETE TVIQDAFAQC IGGLLSVVIL EQVVEIECIH
401: EQGLKISSIK AGSYRSRIAP DARTATIDVG DMYAEEERDF LVLLEIPCCD NGSGESESLS LLKVRCVYKD PVTKEIVHVE SGELSIQRPM KLTGKEVVSI
501: EVDRQLNRFL VSQAMSEARV LADGGDLSGA VGILRNRERE LSETPSAQSS DRLCQSLSSE LSALQERMTS RRMYRTSGRA YAFSSMSSHS AQRATARGDS
601: TQGFSPVQAY QTSPMARMVT RSQLLVLESP TKPSPGRGEQ S

Arabidopsis Description

T6D22.13 [Source:UniProtKB/TrEMBL;Acc:Q9LN03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.