Factsheet for Zm00001d035428_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
peroxisome 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035434_P001	Maize	cytosol	61.1	89.32
Zm00001d045454_P001	Maize	plasma membrane	29.06	30.0
Zm00001d036069_P001	Maize	endoplasmic reticulum, extracellular, vacuole	27.12	28.84
Zm00001d036068_P001	Maize	mitochondrion, plastid	22.8	27.77
Zm00001d036072_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	23.1	24.6
Zm00001d045456_P001	Maize	endoplasmic reticulum, plasma membrane	21.76	24.25
Zm00001d036066_P001	Maize	cytosol	23.7	23.91
Zm00001d008553_P001	Maize	cytosol	17.29	23.25
Zm00001d007190_P001	Maize	cytosol	17.29	23.15
Zm00001d051773_P001	Maize	plasma membrane	14.9	21.79
Zm00001d024014_P001	Maize	cytosol	16.1	21.47
Zm00001d024886_P002	Maize	cytosol	16.1	20.93
Zm00001d032750_P001	Maize	plastid	18.03	19.27
Zm00001d051119_P001	Maize	nucleus	19.08	18.6
Zm00001d032753_P001	Maize	cytosol	17.73	18.54
Zm00001d017247_P002	Maize	mitochondrion	19.08	18.39
Zm00001d027622_P001	Maize	mitochondrion	18.48	17.92
Zm00001d027621_P001	Maize	cytosol	19.52	17.51
Zm00001d051977_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	18.33	16.83
Zm00001d014084_P001	Maize	mitochondrion	17.59	16.79
Zm00001d018428_P001	Maize	mitochondrion	18.33	16.64
Zm00001d025825_P001	Maize	mitochondrion	16.84	16.05
Zm00001d004553_P001	Maize	peroxisome	13.86	12.4
Zm00001d024940_P001	Maize	peroxisome	13.56	12.35
Zm00001d020013_P001	Maize	cytosol	9.09	11.6
GSMUA_Achr4P06340_001	Banana	mitochondrion	0.15	0.52

Protein Annotations

EnsemblPlants:Zm00001d035428_P001	EnsemblPlants:Zm00001d035428_T001	EnsemblPlantsGene:Zm00001d035428	Gene3D:3.40.50.410	InterPro:IPR002035	InterPro:IPR036465
InterPro:VWF_A	InterPro:vWFA_dom_sf	PANTHER:PTHR10579	PANTHER:PTHR10579:SF57	PFAM:PF13768	PFscan:PS50234
ProteinID:AQK78966.1	SEG:seg	SMART:SM00327	SUPFAM:SSF53300	UniParc:UPI0008437CB7	UniProt:A0A1D6LGC2
MapMan:35.2	:	:	:	:	:

Description

Zinc finger (C3HC4-type RING finger) family protein

Coordinates

chr6:-:25148734..25154201

Molecular Weight (calculated)

73684.0 Da

IEP (calculated)

9.830

GRAVY (calculated)

-0.229

Length

671 amino acids

Sequence
(BLAST)

001: MASAVGRARR AQMGFGGGGR LGRQQQLEAR GRRRSEMGTR KQGRRCGLER KREKIVVVKC RCFSNSKMRM QVKMTLEKVR VSIATNPHIL LIDSAHTFTL
101: NGKAVVRVEA PSSMKNHAPI DLVTLININQ SMSWPAASQT EIPSRLDLLK NAMKFIIRQL GDDDRLAIVA FNDKVIKENT TGILEISGSG RMAIEKKVDG
201: LVAMGDTAFK PSLEHAVKLL DDRADKKRAG FIVLISDGLD GQSKWGDESI TPTDPIRGLL RKYPVHTFGL GKAHDPKALH YIADISYGIY SSIVTDNLDK
301: IIEAFAVCLA GFKTVVAVDA CVDIWSNSLL ITRIDPGGYI LRGSSGGILV GTLYAGEVKD FIVYFSYRTG SWSGGYYTIL NGINARVTYR EAPGRQSTTT
401: DTCSVSLPIH VANSSSPPAN PCPPYPMVLQ QMVRLKVLDL LISVLKEFLV LKGEAASAVH GKEGGDDPVL QAIAASLLQR KWKEFKQSDE SWKEAPRNFV
501: NLGGIDEDIS AMVGILKRGL GVGCIHSWLS SNQMQRATAT GGLPGAHMVA TGQFRTPAMN AMVQEAHRHL AREASAHDAG TSIVCKRAVE LLDGINKRFD
601: LWCKLDQELP RTNQPSPHQE EGHESRDLTA VLRGDINRAR QHDIYLAADH AIKQWRSFLT SVEKTHGHGH I

Best Arabidopsis Sequence Match ( AT1G08050.1 )
(BLAST)

001: MENPNNLRES KSHLNLNECL TLPKTLDPSS PSPSDASRSS VDPNRPDSSS SRPGSTPSSS GLRFSKGRCA ICLYEIRKED GKAIFTAECS HSFHFDCITS
101: NVKHGNRICP LCRTQWKQVP LCDVDSVPTF VAQRGFEDDE PLPQGDTQIH SDGHRSDHQA LEIKLFPEVS ALAKPVSRAD FAVLVHLKAE GVSDDARRAR
201: APLDLITVLD VSGSMDGVKM ELMKNAMSFV IQNLGETDRL SVISFSSMAR RLFPLRLMSE TGKQAAMQAV NSLVADGGTN IAEGLKIGAR VIEGRRWKNP
301: VSGMMLLSDG QDNFTFSHAG VRLRTDYESL LPSSCRIPIH TFGFGSDHDA ELMHTISEVS SGTFSFIETE TVIQDAFAQC IGGLLSVVIL EQVVEIECIH
401: EQGLKISSIK AGSYRSRIAP DARTATIDVG DMYAEEERDF LVLLEIPCCD NGSGESESLS LLKVRCVYKD PVTKEIVHVE SGELSIQRPM KLTGKEVVSI
501: EVDRQLNRFL VSQAMSEARV LADGGDLSGA VGILRNRERE LSETPSAQSS DRLCQSLSSE LSALQERMTS RRMYRTSGRA YAFSSMSSHS AQRATARGDS
601: TQGFSPVQAY QTSPMARMVT RSQLLVLESP TKPSPGRGEQ S

Arabidopsis Description

T6D22.13 [Source:UniProtKB/TrEMBL;Acc:Q9LN03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.