Factsheet for Zm00001d051119_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU85324	Sorghum	mitochondrion	92.01	90.04
Zm00001d017247_P002	Maize	mitochondrion	90.12	89.08
HORVU6Hr1G057680.2	Barley	cytosol, mitochondrion, nucleus	82.12	79.35
TraesCS6D01G207700.2	Wheat	mitochondrion	81.83	79.3
TraesCS6B01G254400.1	Wheat	mitochondrion	81.54	79.01
TraesCS6A01G227300.1	Wheat	mitochondrion	81.54	78.9
Os02t0619600-01	Rice	mitochondrion	80.81	78.42
Zm00001d025825_P001	Maize	mitochondrion	65.55	64.06
GSMUA_Achr5P20480_001	Banana	mitochondrion	52.91	57.41
GSMUA_Achr11P...	Banana	mitochondrion	52.03	57.28
GSMUA_Achr1P03470_001	Banana	mitochondrion, plastid	52.03	55.94
VIT_13s0019g04440.t01	Wine grape	endoplasmic reticulum	54.94	53.24
VIT_06s0004g02630.t01	Wine grape	mitochondrion, nucleus	55.67	52.54
CDY31517	Canola	extracellular, mitochondrion, plastid	45.35	52.17
Zm00001d051977_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	55.38	52.12
Zm00001d018428_P001	Maize	mitochondrion	55.09	51.29
CDY52708	Canola	extracellular, mitochondrion, plastid	44.77	51.16
PGSC0003DMT400059986	Potato	nucleus	53.49	50.62
Zm00001d027622_P001	Maize	mitochondrion	50.87	50.58
Solyc05g056140.2.1	Tomato	nucleus	53.34	50.41
GSMUA_Achr11P...	Banana	mitochondrion	39.39	50.37
Bra005066.1-P	Field mustard	mitochondrion	47.53	49.85
Zm00001d032750_P001	Maize	plastid	45.49	49.84
Bra020234.1-P	Field mustard	mitochondrion	50.29	49.78
AT5G60710.1	Thale cress	extracellular, mitochondrion, plastid	50.87	49.72
CDX74871	Canola	mitochondrion	43.75	49.34
CDX91506	Canola	mitochondrion	43.6	49.34
PGSC0003DMT400020896	Potato	mitochondrion, plastid	51.89	48.7
AT2G38970.1	Thale cress	mitochondrion	48.98	48.7
Solyc11g069600.1.1	Tomato	plastid	51.6	48.43
Bra002456.1-P	Field mustard	mitochondrion, plastid	48.98	48.14
CDY72156	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	37.5	47.87
CDY67781	Canola	cytosol	36.48	47.45
CDY32819	Canola	cytosol	41.13	46.85
Zm00001d032753_P001	Maize	cytosol	43.31	46.42
Bra030712.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	41.13	46.32
Zm00001d014084_P001	Maize	mitochondrion	47.09	46.09
AT1G08050.1	Thale cress	plastid	42.73	45.87
AT3G54780.4	Thale cress	endoplasmic reticulum, extracellular, plastid	45.2	45.6
CDX93597	Canola	cytosol	40.84	43.7
CDX95099	Canola	cytosol	35.61	43.59
GSMUA_Achr2P11780_001	Banana	golgi	29.65	43.22
Zm00001d007190_P001	Maize	cytosol	30.23	41.52
Zm00001d008553_P001	Maize	cytosol	29.65	40.88
Zm00001d027621_P001	Maize	cytosol	42.01	38.64
Zm00001d024886_P002	Maize	cytosol	21.95	29.26
Zm00001d024014_P001	Maize	cytosol	20.78	28.43
Zm00001d051773_P001	Maize	plasma membrane	18.17	27.23
Zm00001d036068_P001	Maize	mitochondrion, plastid	19.19	23.96
Zm00001d024940_P001	Maize	peroxisome	25.29	23.61
Zm00001d004553_P001	Maize	peroxisome	25.58	23.47
Zm00001d020013_P001	Maize	cytosol	17.3	22.62
Zm00001d036072_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	20.06	21.9
Zm00001d036069_P001	Maize	endoplasmic reticulum, extracellular, vacuole	19.62	21.39
Bra018663.1-P	Field mustard	nucleus	40.55	21.15
Zm00001d045456_P001	Maize	endoplasmic reticulum, plasma membrane	18.31	20.93
Zm00001d045454_P001	Maize	plasma membrane	19.77	20.92
Zm00001d036066_P001	Maize	cytosol	19.19	19.85
Zm00001d035428_P001	Maize	mitochondrion	18.6	19.08
Zm00001d035434_P001	Maize	cytosol	12.35	18.52

Protein Annotations

EntrezGene:103653783	Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	ProteinID:AQK53670.1	InterPro:IPR001841
InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	UniProt:K7U204	PFAM:PF00092	PFAM:PF14624
PFAM:PF17123	PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF49	SMART:SM00184
SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0002213617	InterPro:VWF_A	InterPro:Vwaint_dom
EnsemblPlantsGene:Zm00001d051119	EnsemblPlants:Zm00001d051119_P001	EnsemblPlants:Zm00001d051119_T001	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

Putative RING zinc finger and VWF domain family protein

Coordinates

chr4:-:144245000..144249858

Molecular Weight (calculated)

74886.5 Da

IEP (calculated)

7.334

GRAVY (calculated)

-0.338

Length

688 amino acids

Sequence
(BLAST)

001: MEAAWRKAKR ALGSSLCVHH PAVAGDREDG ASERRASDAL SLDTTAAAHA STPNAPAPPE AGALRRSKSG GKSTNRMCAI CFDSMKPGRG QALFTAECSH
101: MFHFHCISSS VKHGNHVCPV CRAKWKEIPF NRSLSSIVPC GRGGQAWLPQ QSGYMALLRQ VPNHQQQGPD LVTSEPADFN DDKPLQKMES ANIGSSRTVE
201: IKTYSEFSAI QQSSQDDFAV LIHLKAPYAN PEQVTSRSVN ATSIATSRAP VDLVSVLDVS GSMAGTKLAL LKRAMGFVIH HLGPSDRLSV IAFSSTARRL
301: FHLRRMSHSG RQQALQAVNS LGASGGTNIA DALKKAAKVI EDRSHQNPVC SIILLSDGQD TYNILSDIRG VRPDYSSLVP PSILNHTFRL VPVHGFGFGI
401: DHDSDALHSI AEASGGTFSF IEDEGVIQDA FAQCIGGLLS VVVQNVQVNV ECVHPGVQLR CIKSGSYLSK VSADRQNGSV DVGHLYADEE RDFLLSVSLP
501: HCCEQTTLLK VACAYRDSLT NEEIKIQGDE VTILRPKSPV PEPVCMEVDR ERNRVRAADA IEAARDAAER GDLSDAVSIL EDCRRILSES FSSRSGDRLC
601: NALDAELREM QERMANRQRY EASGRAYLLS GLSSHSWQRA TARGDSTDSD TLVYSYQTPS MVHMLQRSQN QGPSQVQQPR ILVEPHPR

Best Arabidopsis Sequence Match ( AT5G60710.1 )
(BLAST)

001: MGSKWRKAKV ALGLNLCLYV PKTLEDSSPP RRSDDAVSLS PVIVQRPSTP TPSSSGLRLP RSMSKSSSKK TCAICLTAMK AGQGHAIFTA ECSHSFHFQC
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR

Arabidopsis Description

Retroelement pol polyprotein-like [Source:UniProtKB/TrEMBL;Acc:Q9FF49]
SUBAcon: [mitochondrion,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.