Factsheet for Zm00001d045454_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER87790	Sorghum	endoplasmic reticulum, extracellular	80.15	81.92
Zm00001d036069_P001	Maize	endoplasmic reticulum, extracellular, vacuole	76.62	78.92
Os11t0687100-01	Rice	nucleus	56.77	58.29
Os06t0578100-00	Rice	nucleus	54.46	53.15
Zm00001d036068_P001	Maize	mitochondrion, plastid	31.85	37.57
Zm00001d036072_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	34.62	35.71
Zm00001d045456_P001	Maize	endoplasmic reticulum, plasma membrane	32.15	34.72
Zm00001d036066_P001	Maize	cytosol	33.38	32.63
Zm00001d035434_P001	Maize	cytosol	21.08	29.85
Zm00001d035428_P001	Maize	mitochondrion	30.0	29.06
Zm00001d008553_P001	Maize	cytosol	20.31	26.45
Zm00001d007190_P001	Maize	cytosol	20.0	25.95
Zm00001d024014_P001	Maize	cytosol	18.62	24.06
Zm00001d024886_P002	Maize	cytosol	19.08	24.03
Zm00001d032753_P001	Maize	cytosol	23.23	23.52
Zm00001d032750_P001	Maize	plastid	21.38	22.13
Zm00001d051773_P001	Maize	plasma membrane	15.23	21.57
Zm00001d027621_P001	Maize	cytosol	23.69	20.59
Zm00001d027622_P001	Maize	mitochondrion	21.69	20.38
Zm00001d051119_P001	Maize	nucleus	20.92	19.77
Zm00001d017247_P002	Maize	mitochondrion	21.08	19.68
Zm00001d051977_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	21.85	19.43
Zm00001d018428_P001	Maize	mitochondrion	22.0	19.35
Zm00001d025825_P001	Maize	mitochondrion	20.92	19.32
Zm00001d014084_P001	Maize	mitochondrion	20.46	18.92
Zm00001d024940_P001	Maize	peroxisome	15.69	13.84
Zm00001d020013_P001	Maize	cytosol	11.08	13.69
Zm00001d004553_P001	Maize	peroxisome	15.54	13.47
GSMUA_Achr4P06340_001	Banana	mitochondrion	0.46	1.56

Protein Annotations

EMBL:BT034495	EnsemblPlants:Zm00001d045454_P001	EnsemblPlants:Zm00001d045454_T001	EnsemblPlantsGene:Zm00001d045454	EntrezGene:100192500	Gene3D:3.40.50.410
InterPro:IPR002035	InterPro:IPR036465	InterPro:VWF_A	InterPro:vWFA_dom_sf	PANTHER:PTHR10579	PANTHER:PTHR10579:SF57
PFAM:PF13768	PFscan:PS50234	ProteinID:AQL02291.1	SEG:seg	SignalP:SignalP-noTM	SMART:SM00327
SUPFAM:SSF53300	UniParc:UPI00017B690A	UniProt:B4FBK7	MapMan:35.2	:	:

Description

Zinc finger (C3HC4-type RING finger) family protein

Coordinates

chr9:-:22857763..22860155

Molecular Weight (calculated)

70299.0 Da

IEP (calculated)

6.546

GRAVY (calculated)

-0.035

Length

650 amino acids

Sequence
(BLAST)

001: MEIFQVTTMI LQHPLLTYFF SALLLTQLLT APIAAAETTV KVSTTPIFPE IPQGQARKDF QVLVRVEAPA RPEARIPIDV VAVLDVSGSM NNPAAAPTER
101: TRTTSRLDLL KTAAKFMVAK LEDGDRLSIV AFSDRPVREL SSGLLYMTAD GRRNAIRSLD QLEARGGTAL VPAFEEAVKV LDGRQGDGGD RLGFIVLLTD
201: GAEDASGSFT LSERRREVIR GALRKYPVHA FGLGTAHGPE VLLYLAQESR GTYSFVDGDN VGEVAGALAV CLGGLTTVAA VDTRVVLRAD ELNGVRVDRV
301: DSGGHDSSVS CGGTSCEVSV GVLYAGEAKH FVVHLHVPAI TATASASTEG GYYCDGLGVC DHYRHHRHHR HGQHLLAVGY SYRSHPSARA ITVEAHGVFV
401: QRSPAVLDLD GGRHAPVIPS PSPVVLQHIV RFELLEVVAN SLVRGELISN DDRARAADVL QVKWEEFRAC HQFWGGGLLD LMSGLEKEVD GMVGSLRAGV
501: AAYVYAWVSS HQMQRATSIG SPDKAAVEFL TPAMRLLLEE ARKLPRWQQA ATTTAAPTNV QYAGCVGGGG FEMVDRRLEL WSKMKRDVQL LVSVQEQAAA
601: DEEEQHLAAV FQEASLAAID RAMHRDIYLA AVYASKQTRC HSVGCQQVKD

Best Arabidopsis Sequence Match ( AT3G54780.1 )
(BLAST)

001: MVSKWKKMKL ALSLNLCNYL PRTLEEEPPS LALNSAETLS DAALLSPLNW PMTPTPSSYR RRLSRSSSKS SKTCSICLNK MKEGCGHAIF TAECSHMFHF
101: HCIASNVKHG NQVCPVCRAK WKEIPIQKPS LDLPYYPFDR CNNDAAISLF RCLPPSQRAI TQGHPEPATF DDDERLEEQI VFDGETEVLK KENRDYVRMM
201: DMKVYPEVSA VPQSKSCENF DVLVHLKAVT GDQISQYRRA PIDLVTVLDI SGSMGGTKLA LLKRAMGFVI QNLGSSDRLS VIAFSSTARR LFPLTRMSDA
301: GRQLALQAVN SLVANGGTNI VDGLRKGAKV MEDRLERNSV ASIILLSDGR DTYTTNHPDP SYKVMLPQIS VHSFGFGSDH DASVMHSVSE VSGGTFSFIE
401: SESVIQDALA QCIGGLLSVA VQELRVEIEG VSPNVRLSSI KAGSYSSLVT GDGHSGLVDL GDLYADEERD FLVSINIPVE EDGHTPLLKL RCLYINPLTK
501: EITTLESHVL QIRRPEYVAE EKVVPIEVVR QRNRFLAAEA MAQARTLAEH GDLEAAVKAI ENFRLVLAET VAAKSCDRFC VALDSELKEM QGRMRSSHMY
601: EASGRAYILS GLSSHSWQRA TARGNSRDSS SFVQAYQTPS MAEMLRRSQA MFLVSPSHHR LIQPLLSFAS QPKPR

Arabidopsis Description

Zinc finger (C3HC4-type RING finger) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LN98]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.