Factsheet for Zm00001d008553_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007190_P001	Maize	cytosol	90.18	89.82
OQU90497	Sorghum	cytosol	78.76	76.31
OQU79988	Sorghum	cytosol	80.76	74.49
TraesCS5A01G359200.1	Wheat	cytosol, peroxisome, plastid	69.54	66.22
HORVU5Hr1G076190.1	Barley	cytosol, peroxisome	68.14	65.51
TraesCS5B01G284200.1	Wheat	cytosol	65.73	65.47
TraesCS5A01G284900.1	Wheat	cytosol, mitochondrion, plastid	35.87	62.15
TraesCS2B01G515000.1	Wheat	cytosol	65.53	61.93
TraesCS2D01G459400.1	Wheat	mitochondrion	60.92	58.02
Zm00001d032753_P001	Maize	cytosol	53.11	41.28
Zm00001d027621_P001	Maize	cytosol	50.3	33.56
Zm00001d032750_P001	Maize	plastid	40.68	32.32
Zm00001d027622_P001	Maize	mitochondrion	42.08	30.35
Zm00001d051119_P001	Maize	nucleus	40.88	29.65
Zm00001d017247_P002	Maize	mitochondrion	41.28	29.6
Zm00001d014084_P001	Maize	mitochondrion	40.48	28.73
Os10t0464800-00	Rice	nucleus	54.31	28.56
Zm00001d024886_P002	Maize	cytosol	28.86	27.91
Zm00001d024014_P001	Maize	cytosol	27.45	27.24
Zm00001d025825_P001	Maize	mitochondrion	37.88	26.85
Zm00001d051977_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	39.08	26.68
Zm00001d018428_P001	Maize	mitochondrion	39.08	26.39
Zm00001d051773_P001	Maize	plasma membrane	23.05	25.05
Zm00001d036068_P001	Maize	mitochondrion, plastid	23.85	21.6
Zm00001d036069_P001	Maize	endoplasmic reticulum, extracellular, vacuole	26.05	20.6
Zm00001d045454_P001	Maize	plasma membrane	26.45	20.31
Zm00001d036072_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	24.85	19.68
Zm00001d045456_P001	Maize	endoplasmic reticulum, plasma membrane	22.65	18.77
Zm00001d036066_P001	Maize	cytosol	24.05	18.05
Zm00001d035428_P001	Maize	mitochondrion	23.25	17.29
Zm00001d024940_P001	Maize	peroxisome	24.85	16.82
Zm00001d035434_P001	Maize	cytosol	15.43	16.78
Zm00001d004553_P001	Maize	peroxisome	24.85	16.53
Zm00001d020013_P001	Maize	cytosol	14.23	13.5

Protein Annotations

EnsemblPlants:Zm00001d008553_P001	EnsemblPlants:Zm00001d008553_T001	EnsemblPlantsGene:Zm00001d008553	EntrezGene:103636755	Gene3D:3.40.50.410	InterPro:IPR002035
InterPro:IPR036465	InterPro:VWF_A	InterPro:Vwaint_dom	InterPro:vWFA_dom_sf	PANTHER:PTHR10579	PANTHER:PTHR10579:SF51
PFAM:PF00092	PFAM:PF14624	PFscan:PS50234	ProteinID:AQK90159.1	SEG:seg	SMART:SM00327
SUPFAM:SSF53300	UniParc:UPI0002215B56	UniProt:K7VA22	MapMan:35.1	:	:

Description

Zinc finger (C3HC4-type RING finger) family protein

Coordinates

chr8:-:12755616..12757115

Molecular Weight (calculated)

53135.5 Da

IEP (calculated)

7.450

GRAVY (calculated)

-0.112

Length

499 amino acids

Sequence
(BLAST)

001: MSAPQPAGKY QDDEPLERST VPAQAPTANG GLALSTQCEF PAIARSASRD RFAVLVHAKA PSDVARAPLD LVTVLDVSSS MKGQKLELLK QAMCFVIDQL
101: SPIDRLSVVT FSNDAIRLTR LNRMSDLGKA CAKRAVLSLG VRYSTNIGSG LRVGAQVLAG RREKNVVAGM ILLSDGQDNS GCWPTVLVPP SFTSAGGGGW
201: PAPIHTFGFG TDHDAAAMHA IAEATGGTFS FVGNEAAIQS SFARCVGGLL SVAVQEARVA VTCLHQGVRI QEVKSGAYVS HLGADGIAAT IDVGELYEGE
301: ERRFLVLVYV PRVRSTEEVT RLVKARCTYR ETATGLARHV AAPAAVVQRP LELTTLPAPS VDVERERVRL AATEDIAAAR VAADDGQNAG AVRILESRLR
401: AVELSAPGDP TCEAIKEELR DLSARVGDRA EYQKTGRACM LVGMSSHAQQ RASGMDVEAT SKASAYLTPK MEEMVDLSRE SESTRKQKQP VKQAKVEEV

Best Arabidopsis Sequence Match ( AT1G08050.1 )
(BLAST)

001: MENPNNLRES KSHLNLNECL TLPKTLDPSS PSPSDASRSS VDPNRPDSSS SRPGSTPSSS GLRFSKGRCA ICLYEIRKED GKAIFTAECS HSFHFDCITS
101: NVKHGNRICP LCRTQWKQVP LCDVDSVPTF VAQRGFEDDE PLPQGDTQIH SDGHRSDHQA LEIKLFPEVS ALAKPVSRAD FAVLVHLKAE GVSDDARRAR
201: APLDLITVLD VSGSMDGVKM ELMKNAMSFV IQNLGETDRL SVISFSSMAR RLFPLRLMSE TGKQAAMQAV NSLVADGGTN IAEGLKIGAR VIEGRRWKNP
301: VSGMMLLSDG QDNFTFSHAG VRLRTDYESL LPSSCRIPIH TFGFGSDHDA ELMHTISEVS SGTFSFIETE TVIQDAFAQC IGGLLSVVIL EQVVEIECIH
401: EQGLKISSIK AGSYRSRIAP DARTATIDVG DMYAEEERDF LVLLEIPCCD NGSGESESLS LLKVRCVYKD PVTKEIVHVE SGELSIQRPM KLTGKEVVSI
501: EVDRQLNRFL VSQAMSEARV LADGGDLSGA VGILRNRERE LSETPSAQSS DRLCQSLSSE LSALQERMTS RRMYRTSGRA YAFSSMSSHS AQRATARGDS
601: TQGFSPVQAY QTSPMARMVT RSQLLVLESP TKPSPGRGEQ S

Arabidopsis Description

T6D22.13 [Source:UniProtKB/TrEMBL;Acc:Q9LN03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.