Factsheet for Zm00001d051773_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G001800.2	Barley	cytosol	39.22	39.05
Zm00001d024014_P001	Maize	cytosol	28.98	26.44
Zm00001d024886_P002	Maize	cytosol	29.63	26.36
Zm00001d007190_P001	Maize	cytosol	25.49	23.35
Zm00001d008553_P001	Maize	cytosol	25.05	23.05
Zm00001d032750_P001	Maize	plastid	27.02	19.75
Zm00001d032753_P001	Maize	cytosol	26.14	18.69
Zm00001d051119_P001	Maize	nucleus	27.23	18.17
Zm00001d017247_P002	Maize	mitochondrion	26.8	17.67
Zm00001d014084_P001	Maize	mitochondrion	27.02	17.64
Zm00001d027621_P001	Maize	cytosol	28.32	17.38
Zm00001d036068_P001	Maize	mitochondrion, plastid	20.7	17.24
Zm00001d018428_P001	Maize	mitochondrion	27.23	16.91
Zm00001d027622_P001	Maize	mitochondrion	25.05	16.62
Zm00001d025825_P001	Maize	mitochondrion	25.27	16.48
Zm00001d051977_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	26.14	16.42
Zm00001d036069_P001	Maize	endoplasmic reticulum, extracellular, vacuole	21.35	15.53
Zm00001d045454_P001	Maize	plasma membrane	21.57	15.23
Zm00001d036072_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	20.48	14.92
Zm00001d035428_P001	Maize	mitochondrion	21.79	14.9
Zm00001d045456_P001	Maize	endoplasmic reticulum, plasma membrane	19.39	14.78
Zm00001d035434_P001	Maize	cytosol	13.73	13.73
Zm00001d036066_P001	Maize	cytosol	19.39	13.38
Zm00001d020013_P001	Maize	cytosol	13.51	11.79
Zm00001d024940_P001	Maize	peroxisome	18.52	11.53
Zm00001d004553_P001	Maize	peroxisome	18.74	11.47

Protein Annotations

EMBL:BT060957	EnsemblPlants:Zm00001d051773_P001	EnsemblPlants:Zm00001d051773_T001	EnsemblPlantsGene:Zm00001d051773	EntrezGene:100304363	Gene3D:3.40.50.410
InterPro:IPR002035	InterPro:IPR036465	InterPro:VWF_A	InterPro:Vwaint_dom	InterPro:vWFA_dom_sf	ncoils:Coil
PANTHER:PTHR10579	PANTHER:PTHR10579:SF64	PFAM:PF00092	PFAM:PF14624	PFscan:PS50234	ProteinID:AQK55112.1
SMART:SM00327	SUPFAM:SSF53300	UniParc:UPI0001948A68	UniProt:C0HF51	MapMan:35.2	:

Description

Zinc finger (C3HC4-type RING finger) family protein

Coordinates

chr4:+:169202307..169204728

Molecular Weight (calculated)

51489.7 Da

IEP (calculated)

8.685

GRAVY (calculated)

-0.475

Length

459 amino acids

Sequence
(BLAST)

001: MAPHGDIDLA KAYHHVTVSM REHTEKVMVK LTAPHTGKGD TAPLDIVVVL DISGSMRGTK LEHMKHAMTR FIIEKLGIRG DRLAIITFES KAHKVFDLSS
101: MLPDQVKKAV AVVEGLKAGG DTNIKAGLEA GLDVLKTRRG HSHNASCIFL MSDGHENVDK ARTLLDRVGE HSVVTFGFGE KSDEQLLYDI AYHSHAGTYH
201: HVREKEDENQ LMKAFAFLAI YRSISMLDLK VTVSAHKEAA GAIIRGVDPC RYRVDGPHGD GSFTVHFGDL AREESRRILV DVQLPQVQHE QKDKPVIHVK
301: YEYSSPKKVK VTNTLDIKMN RVQNPGQAAM NPNVSRELAR RAQVEHLRKV MDLANKKNLG AAKDEVERAR NALNSITHDT DDAVDSLFNE LDNIEEFLET
401: YDIYNKLGRS YLLACISSHE RQRYAERGGA APVDLYLTQR MNKYLDQAHK VHKNPKTKI

Best Arabidopsis Sequence Match ( AT1G08050.1 )
(BLAST)

001: MENPNNLRES KSHLNLNECL TLPKTLDPSS PSPSDASRSS VDPNRPDSSS SRPGSTPSSS GLRFSKGRCA ICLYEIRKED GKAIFTAECS HSFHFDCITS
101: NVKHGNRICP LCRTQWKQVP LCDVDSVPTF VAQRGFEDDE PLPQGDTQIH SDGHRSDHQA LEIKLFPEVS ALAKPVSRAD FAVLVHLKAE GVSDDARRAR
201: APLDLITVLD VSGSMDGVKM ELMKNAMSFV IQNLGETDRL SVISFSSMAR RLFPLRLMSE TGKQAAMQAV NSLVADGGTN IAEGLKIGAR VIEGRRWKNP
301: VSGMMLLSDG QDNFTFSHAG VRLRTDYESL LPSSCRIPIH TFGFGSDHDA ELMHTISEVS SGTFSFIETE TVIQDAFAQC IGGLLSVVIL EQVVEIECIH
401: EQGLKISSIK AGSYRSRIAP DARTATIDVG DMYAEEERDF LVLLEIPCCD NGSGESESLS LLKVRCVYKD PVTKEIVHVE SGELSIQRPM KLTGKEVVSI
501: EVDRQLNRFL VSQAMSEARV LADGGDLSGA VGILRNRERE LSETPSAQSS DRLCQSLSSE LSALQERMTS RRMYRTSGRA YAFSSMSSHS AQRATARGDS
601: TQGFSPVQAY QTSPMARMVT RSQLLVLESP TKPSPGRGEQ S

Arabidopsis Description

T6D22.13 [Source:UniProtKB/TrEMBL;Acc:Q9LN03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.