Factsheet for Zm00001d027622_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU93256	Sorghum	mitochondrion	93.64	92.84
TraesCS5A01G512800.2	Wheat	mitochondrion	75.58	73.97
HORVU4Hr1G084340.1	Barley	mitochondrion	75.43	73.83
TraesCS4D01G339200.1	Wheat	mitochondrion	75.14	73.55
TraesCS4B01G344100.1	Wheat	mitochondrion	75.0	73.41
Os03t0142500-01	Rice	plasma membrane	72.98	72.77
Zm00001d032750_P001	Maize	plastid	54.05	59.55
Zm00001d014084_P001	Maize	mitochondrion	57.23	56.33
GSMUA_Achr11P...	Banana	mitochondrion	48.84	54.08
GSMUA_Achr5P20480_001	Banana	mitochondrion	48.41	52.84
GSMUA_Achr1P03470_001	Banana	mitochondrion, plastid	48.41	52.34
Zm00001d017247_P002	Maize	mitochondrion	51.45	51.15
Zm00001d051119_P001	Maize	nucleus	50.58	50.87
VIT_13s0019g04440.t01	Wine grape	endoplasmic reticulum	52.02	50.7
VIT_06s0004g02630.t01	Wine grape	mitochondrion, nucleus	53.03	50.34
CDY31517	Canola	extracellular, mitochondrion, plastid	42.49	49.16
GSMUA_Achr11P...	Banana	mitochondrion	37.72	48.51
CDY52708	Canola	extracellular, mitochondrion, plastid	42.05	48.34
PGSC0003DMT400059986	Potato	nucleus	50.14	47.73
Solyc05g056140.2.1	Tomato	nucleus	50.0	47.53
CDY72156	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	36.99	47.5
Bra005066.1-P	Field mustard	mitochondrion	44.94	47.41
Zm00001d025825_P001	Maize	mitochondrion	48.12	47.3
AT5G60710.1	Thale cress	extracellular, mitochondrion, plastid	48.12	47.3
CDY67781	Canola	cytosol	36.13	47.26
Bra020234.1-P	Field mustard	mitochondrion	47.25	47.05
CDX74871	Canola	mitochondrion	41.04	46.56
CDY32819	Canola	cytosol	40.61	46.52
CDX91506	Canola	mitochondrion	40.75	46.38
Zm00001d051977_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	48.99	46.37
AT2G38970.1	Thale cress	mitochondrion	46.24	46.24
Bra002456.1-P	Field mustard	mitochondrion, plastid	46.68	46.14
Zm00001d018428_P001	Maize	mitochondrion	48.99	45.87
Bra030712.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	40.46	45.83
PGSC0003DMT400020896	Potato	mitochondrion, plastid	48.12	45.43
Solyc11g069600.1.1	Tomato	plastid	47.98	45.29
AT1G08050.1	Thale cress	plastid	41.47	44.77
AT3G54780.4	Thale cress	endoplasmic reticulum, extracellular, plastid	43.06	43.7
Zm00001d032753_P001	Maize	cytosol	39.88	42.99
GSMUA_Achr2P11780_001	Banana	golgi	29.19	42.8
Zm00001d008553_P001	Maize	cytosol	30.35	42.08
Zm00001d007190_P001	Maize	cytosol	30.35	41.92
CDX93597	Canola	cytosol	38.44	41.37
CDX95099	Canola	cytosol	33.38	41.1
Zm00001d027621_P001	Maize	cytosol	40.61	37.57
Zm00001d024886_P002	Maize	cytosol	21.24	28.49
Zm00001d024014_P001	Maize	cytosol	19.8	27.24
Zm00001d051773_P001	Maize	plasma membrane	16.62	25.05
Zm00001d020013_P001	Maize	cytosol	18.79	24.71
Zm00001d036068_P001	Maize	mitochondrion, plastid	18.5	23.23
Zm00001d024940_P001	Maize	peroxisome	24.28	22.8
Zm00001d004553_P001	Maize	peroxisome	24.13	22.27
Zm00001d036069_P001	Maize	endoplasmic reticulum, extracellular, vacuole	20.23	22.19
Zm00001d036072_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	19.94	21.9
Zm00001d045454_P001	Maize	plasma membrane	20.38	21.69
Bra018663.1-P	Field mustard	nucleus	37.86	19.86
Zm00001d045456_P001	Maize	endoplasmic reticulum, plasma membrane	17.05	19.6
Zm00001d036066_P001	Maize	cytosol	18.35	19.1
Zm00001d035428_P001	Maize	mitochondrion	17.92	18.48
Zm00001d035434_P001	Maize	cytosol	11.99	18.08

Protein Annotations

EntrezGene:103631700	Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	UniProt:A0A1D6JNC9	ncoils:Coil
InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	ProteinID:ONL93544.1	PFAM:PF13768
PFAM:PF14624	PFAM:PF17123	PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF54
SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI000221AAD4	InterPro:VWF_A
InterPro:Vwaint_dom	EnsemblPlantsGene:Zm00001d027622	EnsemblPlants:Zm00001d027622_P001	EnsemblPlants:Zm00001d027622_T001	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

Zinc finger (C3HC4-type RING finger) family protein

Coordinates

chr1:+:9228763..9233305

Molecular Weight (calculated)

75186.5 Da

IEP (calculated)

7.114

GRAVY (calculated)

-0.192

Length

692 amino acids

Sequence
(BLAST)

001: MAAAWARAKR ALATGLCVGV PARQLAIEDA PPVVEAPSSV AEDKLESAPV SVRRLTSFGS RSSQQKTCAI CLGGMRSGQG HALFTAECSH KFHFHCISSN
101: IKHGNLICPI CRAKWKELPG AQPADASYGR ARVNPLNWPQ DEGHMAVVRR LSHTYSGNLQ EHLPFFRTLE AGVFNDDEHI DLQSDNISEH NAVAGSVKIK
201: AYSEVPAIEQ STTKEIFAIL IHLRAPKSSH SASSRAPLDL VTVLDVSGSM AGTKIALLKN AMSFVIQTLG PNDRLSVVAF SSTARRLFPL RRMTLSGRQQ
301: ALQAVSSLVA SGGTNIADGL KKAAKVIEDR RLKNSVCSII LLSDGQDTYT LPSDRNLQDY SAVVPPSILP GTCQHVQIHT FGFGSDHDSA AMHAIAEISS
401: GTFSFIDAEG SIQDGFAQCI GGLLSVVVKE VRLGIECVDN GVLLTSIKSG GYTSQVAEDG RGGSVDIGDL YADEERGFLV TLHVPAAQGQ TVLIKPSCMY
501: HDAITTENIE VHGEEVRIQR PEHRVDCKMS PEVEREWHRV QATEDMSAAR AAAEVGAFSQ AVAILEARRR ILEAQAAQSS DDQFLALMAE LREMQQRVEN
601: RRRYEESGRA FMLAGLSSHS WQRATARGDS TEITTTIHTY QTPSMVDMLQ RSQILVPPIA DMLNSSPTVA PPNRFSRPSR SRTIKSFSEQ LL

Best Arabidopsis Sequence Match ( AT1G08050.1 )
(BLAST)

001: MENPNNLRES KSHLNLNECL TLPKTLDPSS PSPSDASRSS VDPNRPDSSS SRPGSTPSSS GLRFSKGRCA ICLYEIRKED GKAIFTAECS HSFHFDCITS
101: NVKHGNRICP LCRTQWKQVP LCDVDSVPTF VAQRGFEDDE PLPQGDTQIH SDGHRSDHQA LEIKLFPEVS ALAKPVSRAD FAVLVHLKAE GVSDDARRAR
201: APLDLITVLD VSGSMDGVKM ELMKNAMSFV IQNLGETDRL SVISFSSMAR RLFPLRLMSE TGKQAAMQAV NSLVADGGTN IAEGLKIGAR VIEGRRWKNP
301: VSGMMLLSDG QDNFTFSHAG VRLRTDYESL LPSSCRIPIH TFGFGSDHDA ELMHTISEVS SGTFSFIETE TVIQDAFAQC IGGLLSVVIL EQVVEIECIH
401: EQGLKISSIK AGSYRSRIAP DARTATIDVG DMYAEEERDF LVLLEIPCCD NGSGESESLS LLKVRCVYKD PVTKEIVHVE SGELSIQRPM KLTGKEVVSI
501: EVDRQLNRFL VSQAMSEARV LADGGDLSGA VGILRNRERE LSETPSAQSS DRLCQSLSSE LSALQERMTS RRMYRTSGRA YAFSSMSSHS AQRATARGDS
601: TQGFSPVQAY QTSPMARMVT RSQLLVLESP TKPSPGRGEQ S

Arabidopsis Description

T6D22.13 [Source:UniProtKB/TrEMBL;Acc:Q9LN03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.