Factsheet for Zm00001d014084_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032750_P001	Maize	plastid	75.82	84.87
EER91513	Sorghum	mitochondrion	78.81	78.69
Zm00001d027622_P001	Maize	mitochondrion	56.33	57.23
Zm00001d051119_P001	Maize	nucleus	46.09	47.09
Zm00001d017247_P002	Maize	mitochondrion	45.95	46.41
TraesCS1A01G146700.1	Wheat	mitochondrion	42.82	46.38
Zm00001d025825_P001	Maize	mitochondrion	44.95	44.89
Zm00001d051977_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	45.66	43.91
Zm00001d018428_P001	Maize	mitochondrion	46.09	43.84
Zm00001d007190_P001	Maize	cytosol	29.02	40.72
Zm00001d008553_P001	Maize	cytosol	28.73	40.48
Zm00001d032753_P001	Maize	cytosol	35.56	38.94
Zm00001d027621_P001	Maize	cytosol	37.98	35.7
Os10t0464500-00	Rice	extracellular, plasma membrane	21.34	30.86
Zm00001d024886_P002	Maize	cytosol	21.62	29.46
Zm00001d024014_P001	Maize	cytosol	20.2	28.23
Zm00001d051773_P001	Maize	plasma membrane	17.64	27.02
Zm00001d024940_P001	Maize	peroxisome	25.32	24.15
Zm00001d004553_P001	Maize	peroxisome	25.6	24.0
Zm00001d020013_P001	Maize	cytosol	16.79	22.43
Zm00001d036068_P001	Maize	mitochondrion, plastid	17.35	22.14
Zm00001d036069_P001	Maize	endoplasmic reticulum, extracellular, vacuole	18.63	20.76
Zm00001d045454_P001	Maize	plasma membrane	18.92	20.46
Zm00001d036072_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	18.07	20.16
Zm00001d045456_P001	Maize	endoplasmic reticulum, plasma membrane	16.36	19.1
Zm00001d036066_P001	Maize	cytosol	17.21	18.2
Zm00001d035434_P001	Maize	cytosol	11.81	18.08
Zm00001d035428_P001	Maize	mitochondrion	16.79	17.59

Protein Annotations

EntrezGene:103626190	Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	UniProt:A0A1D6GPU3	ProteinID:AQK65191.1
InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	PFAM:PF00092	PFAM:PF14624
PFAM:PF17123	PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF98	SMART:SM00184
SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0004DEB3D1	InterPro:VWF_A	InterPro:Vwaint_dom
EnsemblPlantsGene:Zm00001d014084	EnsemblPlants:Zm00001d014084_P001	EnsemblPlants:Zm00001d014084_T001	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

Zinc finger (C3HC4-type RING finger) family protein

Coordinates

chr5:+:31806506..31810397

Molecular Weight (calculated)

76335.2 Da

IEP (calculated)

6.003

GRAVY (calculated)

-0.245

Length

703 amino acids

Sequence
(BLAST)

001: MAPAWERARR ALATRFCMRF AARRVVVEDA PRGMDDIEAE EEEEQEQQQH QEEPAEDERE MSLAAESEDL ASSWSGSRSS ETCAICLSGM RSGRGQALFT
101: AECSHKFHFN CISSNVQHGN KICPICRAVW KELPFQGHVA TSAAAHVVWP QMSMQSVSPL DELPVFGYQD TAVMNDDEQI QPTETAVGDE APPPPPPLLE
201: ITTYTEFPAV QESVAHEEFA IVIHLKAPSW VSTRAPLDLV TVLDVSGSMS GPKLALVKRA MRFVIENLDP SDRLSVVAFS SAAWRLFPLR RMTASGQQQS
301: LQAVNCLVAD GGTNIADGLR KATRVVQDRH ARNPVCSIML LSDGVDSHVL PPRRGSAPDY GRLVPRSALL PGSEHHVPIH AFGFGIDHDS RALHAVAQMS
401: GGTFSFIDVV GSIQDAFAQC IGGLLSVVAQ ETTLSVECAD QGVLLTSIKS GSYASGADGD GRGGFVDVGR LYADEERDFL VTVRVPPSRG TIALVRPSCT
501: YRDAVTTEMV RVGGDPVTLL RAASPVSAAM SLQVEREWHR VHATEDMAAA QAAAEEHDYA RAASILEARR RLLESCASLS SDQQTQALVA ELREMQERVL
601: NPRLYQGFGR AYILSGLSSH SWQRATARGD STELTGLVHT YQTPSMVNML NRSQALQPEV AEALTRSPTI APLRSPAPAS GSRGTRRGPR SFRPAKSFTG
701: RSS

Best Arabidopsis Sequence Match ( AT1G08050.1 )
(BLAST)

001: MENPNNLRES KSHLNLNECL TLPKTLDPSS PSPSDASRSS VDPNRPDSSS SRPGSTPSSS GLRFSKGRCA ICLYEIRKED GKAIFTAECS HSFHFDCITS
101: NVKHGNRICP LCRTQWKQVP LCDVDSVPTF VAQRGFEDDE PLPQGDTQIH SDGHRSDHQA LEIKLFPEVS ALAKPVSRAD FAVLVHLKAE GVSDDARRAR
201: APLDLITVLD VSGSMDGVKM ELMKNAMSFV IQNLGETDRL SVISFSSMAR RLFPLRLMSE TGKQAAMQAV NSLVADGGTN IAEGLKIGAR VIEGRRWKNP
301: VSGMMLLSDG QDNFTFSHAG VRLRTDYESL LPSSCRIPIH TFGFGSDHDA ELMHTISEVS SGTFSFIETE TVIQDAFAQC IGGLLSVVIL EQVVEIECIH
401: EQGLKISSIK AGSYRSRIAP DARTATIDVG DMYAEEERDF LVLLEIPCCD NGSGESESLS LLKVRCVYKD PVTKEIVHVE SGELSIQRPM KLTGKEVVSI
501: EVDRQLNRFL VSQAMSEARV LADGGDLSGA VGILRNRERE LSETPSAQSS DRLCQSLSSE LSALQERMTS RRMYRTSGRA YAFSSMSSHS AQRATARGDS
601: TQGFSPVQAY QTSPMARMVT RSQLLVLESP TKPSPGRGEQ S

Arabidopsis Description

T6D22.13 [Source:UniProtKB/TrEMBL;Acc:Q9LN03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.