Factsheet for Zm00001d036068_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036072_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	74.41	65.08
Zm00001d036066_P001	Maize	cytosol	75.32	62.41
Zm00001d045456_P001	Maize	endoplasmic reticulum, plasma membrane	65.88	60.3
Os11t0687200-02	Rice	golgi	40.29	37.12
Os06t0578700-01	Rice	golgi	38.66	36.6
Zm00001d036069_P001	Maize	endoplasmic reticulum, extracellular, vacuole	38.29	33.44
Zm00001d045454_P001	Maize	plasma membrane	37.57	31.85
Zm00001d035434_P001	Maize	cytosol	20.15	24.18
Zm00001d008553_P001	Maize	cytosol	21.6	23.85
Zm00001d007190_P001	Maize	cytosol	20.87	22.95
Zm00001d035428_P001	Maize	mitochondrion	27.77	22.8
Zm00001d024886_P002	Maize	cytosol	20.69	22.09
Zm00001d024014_P001	Maize	cytosol	20.15	22.07
Zm00001d051773_P001	Maize	plasma membrane	17.24	20.7
Zm00001d032750_P001	Maize	plastid	22.87	20.06
Zm00001d032753_P001	Maize	cytosol	22.87	19.63
Zm00001d051119_P001	Maize	nucleus	23.96	19.19
Zm00001d017247_P002	Maize	mitochondrion	23.59	18.68
Zm00001d027622_P001	Maize	mitochondrion	23.23	18.5
Zm00001d018428_P001	Maize	mitochondrion	24.5	18.27
Zm00001d051977_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	24.14	18.19
Zm00001d027621_P001	Maize	cytosol	23.96	17.65
Zm00001d025825_P001	Maize	mitochondrion	22.32	17.47
Zm00001d014084_P001	Maize	mitochondrion	22.14	17.35
Zm00001d024940_P001	Maize	peroxisome	14.88	11.13
Zm00001d004553_P001	Maize	peroxisome	14.7	10.8
Zm00001d020013_P001	Maize	cytosol	9.26	9.7
GSMUA_Achr4P06340_001	Banana	mitochondrion	0.18	0.52

Protein Annotations

EnsemblPlants:Zm00001d036068_P001	EnsemblPlants:Zm00001d036068_T001	EnsemblPlantsGene:Zm00001d036068	Gene3D:3.40.50.410	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR002035	InterPro:IPR036465	InterPro:VWF_A	InterPro:vWFA_dom_sf	PANTHER:PTHR10579
PANTHER:PTHR10579:SF57	PFAM:PF13768	PFscan:PS50234	ProteinID:AQK80244.1	SEG:seg	SMART:SM00327
SUPFAM:SSF53300	TMHMM:TMhelix	UniParc:UPI000842D302	UniProt:A0A1D6LKL0	MapMan:35.2	:

Description

Zinc finger (C3HC4-type RING finger) family protein

Coordinates

chr6:-:70164924..70166649

Molecular Weight (calculated)

58799.7 Da

IEP (calculated)

6.997

GRAVY (calculated)

0.210

Length

551 amino acids

Sequence
(BLAST)

001: MAPILTMNHL RIHVPQATAA AETVRVITTP VFPHIPRLQA SKDFQVLVRI EAPPAAQPHR RVPVDIAVVL DVGGSTGTGT GTGTGTTRLD AVKKAVKFII
101: RQIHDDDRLA VVGPSNYRLV TGFLNTHDAR RNVEKSVDQL EPRGEFTSGS GAGLEEAIKI LERLPTSASR SSRARFVILV TDTAVAESGS RFISKLPRDF
201: MLPVHTFGLG AAHDPRALFY IASESHGTYS FVDDQNTDGI TGAIAVCLSG LKDVVAVGTR VRVEAPVGSG VTIEGIQSGG YSRTRDDKTY GEVALGVLYA
301: GEVKSFIVHL SVPALSSTSA VVAGGCDEQQ LLTASFVGHY TASAAAPDPP SPMVTQAILY VQRPPPEAFD VASGGALQRV PVPVVLNHIA RFDVLEMVAT
401: FVDTDIIWRL SSIVTSEVAT KLRIQWDKFL QARQFWSGLD LGVLNAEVRK MVSILEAAGS SGSSTSQSTA TAYMLSWLSS YQMQRPTAMG SPGSVASAFV
501: TVNMQLTLQQ TTIVPTAAPL CICHEISNFY ILELVVSLAC LFVFVLVVAS G

Best Arabidopsis Sequence Match ( AT3G54780.1 )
(BLAST)

001: MVSKWKKMKL ALSLNLCNYL PRTLEEEPPS LALNSAETLS DAALLSPLNW PMTPTPSSYR RRLSRSSSKS SKTCSICLNK MKEGCGHAIF TAECSHMFHF
101: HCIASNVKHG NQVCPVCRAK WKEIPIQKPS LDLPYYPFDR CNNDAAISLF RCLPPSQRAI TQGHPEPATF DDDERLEEQI VFDGETEVLK KENRDYVRMM
201: DMKVYPEVSA VPQSKSCENF DVLVHLKAVT GDQISQYRRA PIDLVTVLDI SGSMGGTKLA LLKRAMGFVI QNLGSSDRLS VIAFSSTARR LFPLTRMSDA
301: GRQLALQAVN SLVANGGTNI VDGLRKGAKV MEDRLERNSV ASIILLSDGR DTYTTNHPDP SYKVMLPQIS VHSFGFGSDH DASVMHSVSE VSGGTFSFIE
401: SESVIQDALA QCIGGLLSVA VQELRVEIEG VSPNVRLSSI KAGSYSSLVT GDGHSGLVDL GDLYADEERD FLVSINIPVE EDGHTPLLKL RCLYINPLTK
501: EITTLESHVL QIRRPEYVAE EKVVPIEVVR QRNRFLAAEA MAQARTLAEH GDLEAAVKAI ENFRLVLAET VAAKSCDRFC VALDSELKEM QGRMRSSHMY
601: EASGRAYILS GLSSHSWQRA TARGNSRDSS SFVQAYQTPS MAEMLRRSQA MFLVSPSHHR LIQPLLSFAS QPKPR

Arabidopsis Description

Zinc finger (C3HC4-type RING finger) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LN98]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.