Factsheet for Zm00001d032750_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014084_P001	Maize	mitochondrion	84.87	75.82
EER91513	Sorghum	mitochondrion	83.28	74.29
Zm00001d027622_P001	Maize	mitochondrion	59.55	54.05
Zm00001d051119_P001	Maize	nucleus	49.84	45.49
Zm00001d017247_P002	Maize	mitochondrion	49.84	44.97
TraesCS1A01G146700.1	Wheat	mitochondrion	45.06	43.61
Zm00001d025825_P001	Maize	mitochondrion	47.45	42.33
Zm00001d051977_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	48.89	42.0
Zm00001d018428_P001	Maize	mitochondrion	49.36	41.95
Zm00001d007190_P001	Maize	cytosol	33.12	41.52
Zm00001d008553_P001	Maize	cytosol	32.32	40.68
Zm00001d032753_P001	Maize	cytosol	40.61	39.72
Zm00001d027621_P001	Maize	cytosol	42.83	35.96
Os10t0464500-00	Rice	extracellular, plasma membrane	24.84	32.1
Zm00001d024886_P002	Maize	cytosol	24.04	29.26
Zm00001d024014_P001	Maize	cytosol	22.61	28.23
Zm00001d051773_P001	Maize	plasma membrane	19.75	27.02
Zm00001d036068_P001	Maize	mitochondrion, plastid	20.06	22.87
Zm00001d004553_P001	Maize	peroxisome	26.43	22.13
Zm00001d024940_P001	Maize	peroxisome	25.96	22.12
Zm00001d036069_P001	Maize	endoplasmic reticulum, extracellular, vacuole	21.82	21.71
Zm00001d045454_P001	Maize	plasma membrane	22.13	21.38
Zm00001d036072_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	20.54	20.48
Zm00001d020013_P001	Maize	cytosol	17.04	20.34
Zm00001d045456_P001	Maize	endoplasmic reticulum, plasma membrane	18.63	19.44
Zm00001d036066_P001	Maize	cytosol	19.75	18.65
Zm00001d035434_P001	Maize	cytosol	13.38	18.3
Zm00001d035428_P001	Maize	mitochondrion	19.27	18.03

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	UniProt:A0A1D6KTS9	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	ProteinID:ONM05990.1
PFAM:PF00092	PFAM:PF00097	PFAM:PF14624	PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579
PANTHER:PTHR10579:SF98	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0002216E94	InterPro:VWF_A
InterPro:Vwaint_dom	EnsemblPlantsGene:Zm00001d032750	EnsemblPlants:Zm00001d032750_P001	EnsemblPlants:Zm00001d032750_T001	InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:	:

Description

Zinc finger (C3HC4-type RING finger) family protein

Coordinates

chr1:-:237240250..237242136

Molecular Weight (calculated)

67639.1 Da

IEP (calculated)

5.833

GRAVY (calculated)

-0.158

Length

628 amino acids

Sequence
(BLAST)

001: MRSGRGQALF TAECSHKFHF NCISSNVQHG NKICPICRAV WKQLPFQGPL AASAAHGSAR VNPAIWPQMS MLSVNPLDEL PVFGNPEPAV FNDDEQILLQ
101: PETAVGGEEG DEVPPLLEIT TYNEFPATQE SVAQEEFAIL IHLKAPHVPS WVSTRAPLDL VTVLDVSGSM SGHKLALLKR AMRFVIENLD PSDRLSVVAF
201: SSSAWRLFPL QRMTASGQQQ SLQAVNSLAA DGGTNIAEGL RKAARVVEDR QARNPVCSIM LLSDGVDSHN LPPRDGSAPD YGPLVPRSIL PGSEHHVPIH
301: AFGFGMDHDS RAMHAVAQMS SGTFSFIDMA GSIQDAFAQC IGGLLSVVAQ ETRLGVDCAD DGVLLTSIKS GGYASGVDGD GRGGFVDVGR LYADEGRDFL
401: VTVRVPQSRG DIALIRPSCT YRDAVTMEMV RVGGDPVTLL RAANPANAGM SLRVEREWHR VHATEDIAAA QTAAEEYDYA RAASILEARR LLLESCASLS
501: SDQQTQALVA ELREMQERVL NAELYEGSGR AYLLSGLSSH SWQRATARGD STELTGLVHS YQTPFMIDML NRSQALQPEV AEALSRSPTI ASSRSSAPTP
601: APASSGSPWT RRGLRSFRPA KSFTGLSL

Best Arabidopsis Sequence Match ( AT1G08050.1 )
(BLAST)

001: MENPNNLRES KSHLNLNECL TLPKTLDPSS PSPSDASRSS VDPNRPDSSS SRPGSTPSSS GLRFSKGRCA ICLYEIRKED GKAIFTAECS HSFHFDCITS
101: NVKHGNRICP LCRTQWKQVP LCDVDSVPTF VAQRGFEDDE PLPQGDTQIH SDGHRSDHQA LEIKLFPEVS ALAKPVSRAD FAVLVHLKAE GVSDDARRAR
201: APLDLITVLD VSGSMDGVKM ELMKNAMSFV IQNLGETDRL SVISFSSMAR RLFPLRLMSE TGKQAAMQAV NSLVADGGTN IAEGLKIGAR VIEGRRWKNP
301: VSGMMLLSDG QDNFTFSHAG VRLRTDYESL LPSSCRIPIH TFGFGSDHDA ELMHTISEVS SGTFSFIETE TVIQDAFAQC IGGLLSVVIL EQVVEIECIH
401: EQGLKISSIK AGSYRSRIAP DARTATIDVG DMYAEEERDF LVLLEIPCCD NGSGESESLS LLKVRCVYKD PVTKEIVHVE SGELSIQRPM KLTGKEVVSI
501: EVDRQLNRFL VSQAMSEARV LADGGDLSGA VGILRNRERE LSETPSAQSS DRLCQSLSSE LSALQERMTS RRMYRTSGRA YAFSSMSSHS AQRATARGDS
601: TQGFSPVQAY QTSPMARMVT RSQLLVLESP TKPSPGRGEQ S

Arabidopsis Description

T6D22.13 [Source:UniProtKB/TrEMBL;Acc:Q9LN03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.