CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032750_P001	Maize	plastid	74.29	83.28
Zm00001d014084_P001	Maize	mitochondrion	78.69	78.81
OQU93256	Sorghum	mitochondrion	55.97	56.45
TraesCS1A01G146700.1	Wheat	mitochondrion	44.32	48.07
OQU85324	Sorghum	mitochondrion	47.87	47.94
OQU81931	Sorghum	mitochondrion	45.17	45.62
OQU85917	Sorghum	nucleus	45.74	43.69
EER95529	Sorghum	nucleus	38.78	42.0
EER91509	Sorghum	nucleus	34.09	41.1
EER91508	Sorghum	cytosol, plastid	36.22	39.41
OQU93258	Sorghum	cytosol	39.2	39.32
OQU91675	Sorghum	cytosol	34.66	39.23
OQU90497	Sorghum	cytosol	28.27	38.64
OQU79988	Sorghum	cytosol	29.55	38.45
Os10t0464500-00	Rice	extracellular, plasma membrane	21.59	31.28
EES11757	Sorghum	cytosol	19.89	26.98
EES10354	Sorghum	plastid	16.05	23.74
EES05180	Sorghum	mitochondrion	12.36	23.58
KXG38506	Sorghum	cytosol	11.22	23.37
KXG25767	Sorghum	mitochondrion	15.06	22.65
KXG20893	Sorghum	cytosol, plastid	19.32	22.26
EER87790	Sorghum	endoplasmic reticulum, extracellular	19.18	21.23
OQU89212	Sorghum	cytosol	16.19	20.39
OQU75754	Sorghum	mitochondrion, plastid	17.76	20.19
OQU81040	Sorghum	peroxisome	19.03	18.74

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	EntrezGene:8070512	UniProt:C5WZE3	EnsemblPlants:EER91513
ProteinID:EER91513	ProteinID:EER91513.1	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465
PFAM:PF00092	PFAM:PF14624	PFAM:PF17123	PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579
PANTHER:PTHR10579:SF98	SMART:SM00184	SMART:SM00327	EnsemblPlantsGene:SORBI_3001G227100	SUPFAM:SSF53300	SUPFAM:SSF57850
UniParc:UPI0001A82597	InterPro:VWF_A	InterPro:Vwaint_dom	RefSeq:XP_002464515.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:21782409..21785684

Molecular Weight (calculated)

76697.3 Da

IEP (calculated)

6.430

GRAVY (calculated)

-0.181

Length

704 amino acids

Sequence
(BLAST)

001: MAPVWERARR ALATRFCMHF AARRVVVDDA PRELVDMEAQ FPVATEAEQQ QQQPEEREVS LASRSSGSRS SAKMCAICLS AMRSGRGQAL FTAECSHKFH
101: FNCISSNVQH GNTICPICRA VWKELPFQGP QLAASAAHGS GRLNPSIWPQ MSMLSVNPLE DELPVVFLIP EPAVFNDDEQ IETAVGGGHY EIPPLLEITT
201: YTEFPAIQES VAQEQFAILI HLRVPTWVRT RAPLDLVTVL DVSRSMSGPK LALLKRAMRF VIENLEPSDR LSVVAFSSSA CRLFPLRKMT AFGQQQSQQA
301: VDSLVADGGT NIAEGLRKAA RVVEDRQARN PVCSIILLSD GVDSHNLPPR DGSAPEPDYA PLVPRSILPG SEHHVPIHAF GLGMDHDHDH DSRAMHAVAQ
401: MSSGTFSFID MVGSSIQDAL AQCIGGLLSV SVVAQETRLS VECADQGVLL TSIKSGSYAS GVDGDGRGGF VHVGRLYADE ERDFLVTVRV PPSRVSTALV
501: RPLCTYHDAV TAEMVRVGGD PVMLLRPEFP VSAGVSLQVE RERHRVRATE DMAAAQAAAE DGDYARAASI LATRRVLLES CASLSWDQQT QALVAELREM
601: QERVLNPQLY EGSGRAYILS GLSSHSWQRA TARGDSTELT YQTRSMVEML SRSQALQPEV PEALSRTPSI SSTSRSPAPT PAPAPASGSS GPRRRLRLSF
701: RPFH

Best Arabidopsis Sequence Match ( AT1G08050.1 )
(BLAST)

001: MENPNNLRES KSHLNLNECL TLPKTLDPSS PSPSDASRSS VDPNRPDSSS SRPGSTPSSS GLRFSKGRCA ICLYEIRKED GKAIFTAECS HSFHFDCITS
101: NVKHGNRICP LCRTQWKQVP LCDVDSVPTF VAQRGFEDDE PLPQGDTQIH SDGHRSDHQA LEIKLFPEVS ALAKPVSRAD FAVLVHLKAE GVSDDARRAR
201: APLDLITVLD VSGSMDGVKM ELMKNAMSFV IQNLGETDRL SVISFSSMAR RLFPLRLMSE TGKQAAMQAV NSLVADGGTN IAEGLKIGAR VIEGRRWKNP
301: VSGMMLLSDG QDNFTFSHAG VRLRTDYESL LPSSCRIPIH TFGFGSDHDA ELMHTISEVS SGTFSFIETE TVIQDAFAQC IGGLLSVVIL EQVVEIECIH
401: EQGLKISSIK AGSYRSRIAP DARTATIDVG DMYAEEERDF LVLLEIPCCD NGSGESESLS LLKVRCVYKD PVTKEIVHVE SGELSIQRPM KLTGKEVVSI
501: EVDRQLNRFL VSQAMSEARV LADGGDLSGA VGILRNRERE LSETPSAQSS DRLCQSLSSE LSALQERMTS RRMYRTSGRA YAFSSMSSHS AQRATARGDS
601: TQGFSPVQAY QTSPMARMVT RSQLLVLESP TKPSPGRGEQ S

Arabidopsis Description

T6D22.13 [Source:UniProtKB/TrEMBL;Acc:Q9LN03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.