CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 4
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG38506	Sorghum	cytosol	84.28	92.01
EES11757	Sorghum	cytosol	91.87	65.32
Zm00001d024014_P001	Maize	cytosol	79.4	58.25
Zm00001d024886_P002	Maize	cytosol	81.03	57.95
TraesCS2B01G026900.1	Wheat	cytosol	46.07	28.38
KXG20893	Sorghum	cytosol, plastid	39.57	23.9
OQU79988	Sorghum	cytosol	24.39	16.64
OQU90497	Sorghum	cytosol	22.49	16.12
EER91509	Sorghum	nucleus	22.49	14.21
EER95529	Sorghum	nucleus	24.39	13.85
EER91508	Sorghum	cytosol, plastid	24.12	13.76
OQU85324	Sorghum	mitochondrion	25.75	13.51
OQU91675	Sorghum	cytosol	22.49	13.34
OQU75754	Sorghum	mitochondrion, plastid	21.95	13.09
OQU81931	Sorghum	mitochondrion	24.39	12.91
OQU93258	Sorghum	cytosol	23.58	12.39
EER91513	Sorghum	mitochondrion	23.58	12.36
TraesCS6B01G057500.1	Wheat	cytosol	16.8	12.3
EER87790	Sorghum	endoplasmic reticulum, extracellular	21.14	12.26
OQU85917	Sorghum	nucleus	23.58	11.8
OQU93256	Sorghum	mitochondrion	21.95	11.6
KXG25767	Sorghum	mitochondrion	13.01	10.26
EES10354	Sorghum	plastid	10.84	8.4
OQU81040	Sorghum	peroxisome	16.26	8.39
OQU89212	Sorghum	cytosol	10.03	6.62

Protein Annotations

EnsemblPlants:EES05180	EnsemblPlantsGene:SORBI_3004G165800	Gene3D:3.40.50.410	InterPro:IPR036465	InterPro:Vwaint_dom	InterPro:vWFA_dom_sf
PANTHER:PTHR10579	PANTHER:PTHR10579:SF64	PFAM:PF14624	ProteinID:EES05180	ProteinID:EES05180.1	RefSeq:XP_002452204.1
SEG:seg	SUPFAM:SSF53300	UniParc:UPI0001A856F1	UniProt:C5XTF2	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr4:+:51552513..51553623

Molecular Weight (calculated)

40135.7 Da

IEP (calculated)

4.518

GRAVY (calculated)

-0.253

Length

369 amino acids

Sequence
(BLAST)

001: MQSRSVLADR NLSSGRVVGV MLMSDGQQNH GGNAADVKIG NAPVYTFGFG ADYDPTVLNA VARNSMGGTF SVVNDVDKLT MAFSQCLAGL LTVLVQDLTV
101: TVTPVEDEST VAAGNYPQTQ DAGSVTVAFG DLYSKEVRKL IVDLLLLAID TERGADILEV TYVYKTAGKL FDGHRAAERH AFPADDPPMD VVKEEAWLQT
201: TTMIMIKQAR TMVDGKKLDD ALDKLVEAQN ALGDVPVADP YDDPLLDALR KELQEVQKLM KSPAVYEQQG RPYAMSSETS HNRQRFAARG DMEKNRLFAT
301: PRMDKYLEQA KKFDEDPTAP MPSADADEKE EVTANPLAPL AGPITFYIQA AVQALQAIEK LINNGAKAV

Best Arabidopsis Sequence Match ( AT1G08050.1 )
(BLAST)

001: MENPNNLRES KSHLNLNECL TLPKTLDPSS PSPSDASRSS VDPNRPDSSS SRPGSTPSSS GLRFSKGRCA ICLYEIRKED GKAIFTAECS HSFHFDCITS
101: NVKHGNRICP LCRTQWKQVP LCDVDSVPTF VAQRGFEDDE PLPQGDTQIH SDGHRSDHQA LEIKLFPEVS ALAKPVSRAD FAVLVHLKAE GVSDDARRAR
201: APLDLITVLD VSGSMDGVKM ELMKNAMSFV IQNLGETDRL SVISFSSMAR RLFPLRLMSE TGKQAAMQAV NSLVADGGTN IAEGLKIGAR VIEGRRWKNP
301: VSGMMLLSDG QDNFTFSHAG VRLRTDYESL LPSSCRIPIH TFGFGSDHDA ELMHTISEVS SGTFSFIETE TVIQDAFAQC IGGLLSVVIL EQVVEIECIH
401: EQGLKISSIK AGSYRSRIAP DARTATIDVG DMYAEEERDF LVLLEIPCCD NGSGESESLS LLKVRCVYKD PVTKEIVHVE SGELSIQRPM KLTGKEVVSI
501: EVDRQLNRFL VSQAMSEARV LADGGDLSGA VGILRNRERE LSETPSAQSS DRLCQSLSSE LSALQERMTS RRMYRTSGRA YAFSSMSSHS AQRATARGDS
601: TQGFSPVQAY QTSPMARMVT RSQLLVLESP TKPSPGRGEQ S

Arabidopsis Description

T6D22.13 [Source:UniProtKB/TrEMBL;Acc:Q9LN03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.