CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051977_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	97.01	97.81
Zm00001d018428_P001	Maize	mitochondrion	92.81	92.56
Os02t0806700-01	Rice	nucleus	89.28	91.01
TraesCS6B01G413100.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	85.89	85.66
TraesCS6D01G360000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	85.62	85.5
TraesCS6A01G375500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	85.21	85.44
HORVU6Hr1G088580.4	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	85.75	85.18
GSMUA_Achr6P36520_001	Banana	plastid	52.65	55.51
OQU85324	Sorghum	mitochondrion	51.7	54.2
OQU81931	Sorghum	mitochondrion	46.68	49.35
OQU93256	Sorghum	mitochondrion	45.59	48.14
EER91513	Sorghum	mitochondrion	43.69	45.74
EER95529	Sorghum	nucleus	37.18	42.15
EER91509	Sorghum	nucleus	31.89	40.24
EER91508	Sorghum	cytosol, plastid	35.01	39.88
OQU79988	Sorghum	cytosol	27.95	38.08
OQU93258	Sorghum	cytosol	36.23	38.03
OQU91675	Sorghum	cytosol	32.02	37.94
OQU90497	Sorghum	cytosol	26.19	37.48
EES11757	Sorghum	cytosol	19.54	27.75
EES10354	Sorghum	plastid	16.01	24.79
KXG25767	Sorghum	mitochondrion	15.33	24.15
EES05180	Sorghum	mitochondrion	11.8	23.58
KXG38506	Sorghum	cytosol	10.45	22.78
EER87790	Sorghum	endoplasmic reticulum, extracellular	19.0	22.01
OQU81040	Sorghum	peroxisome	21.3	21.96
KXG20893	Sorghum	cytosol, plastid	17.91	21.6
OQU89212	Sorghum	cytosol	16.28	21.47
OQU75754	Sorghum	mitochondrion, plastid	17.91	21.32

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	EntrezGene:8084677	UniProt:A0A1Z5RQG6	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005680	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465
EnsemblPlants:OQU85917	ProteinID:OQU85917	ProteinID:OQU85917.1	PFAM:PF00092	PFAM:PF14624	PFAM:PF17123
PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF97	SMART:SM00184	SMART:SM00327
EnsemblPlantsGene:SORBI_3004G337925	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0001A86044	InterPro:VWF_A	InterPro:Vwaint_dom
RefSeq:XP_002454745.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:

Description

hypothetical protein

Coordinates

chr4:-:66966784..66973905

Molecular Weight (calculated)

79094.7 Da

IEP (calculated)

8.188

GRAVY (calculated)

-0.323

Length

737 amino acids

Sequence
(BLAST)

001: MESRWRKAKM SLGLNLCVYV PRTLEGGDDA SSPNTASSTA ALVSPVASSS SAATSTNTTP TAASAEQSSA NGKANGGAGA LMPTTPTPTS AGLRLSKSGS
101: KSFKKTCAIC LTTMKPGQGH ALFTAECSHT FHFHCISANV KHGSSSCPVC RIKWKELPFR GPLPAELPQG NARINPVNGY QNGGHMNILR PLPRARSSGR
201: LHHLATLLPD TDPSTFNDDE PLDLLCEEAN DTQQGCLRTV EIKTYPEFTE VPENTSERNF TVLIHLKAPL AQHLQPSSNL GDGNGLSTTR APVDLITVLD
301: VSGSMAGTKL ALLKRAMGFV IQNLGSSDRL SVIAFSSSAR RLFPLRRMTE SGRQQSLLAV NSLTSNGGTN IAEGLRKGSK VIEERQAKNP VCSIILLSDG
401: QDTYTVSPTA GVHKGAPEYC ALLPSTNGNQ QIPVHVFGFG ADHDSVSLHS ISQTSGGTFS FIETEAAIQD AFAQCIGGLL SVVAQGLHVK VESLHPDVHF
501: GSIRSGSYSS RVSDDKRNGS IDVGDLYAEE ERDFLVSVNV PPGYGETALL KVGCVYKDPL MKETVNMADV QVKISRPAFV SVQSVSIEVD RQKNRLHAAE
601: VMAEARFSAE RGDLTNAVSL LEDCRRMIMG SASGQSGDRL CQALDAELKE MQDRMANRQR YEASGRAYVL SGLSSHSWQR ATARGDSTDS ESLIQAYQTS
701: SMVDMLLRSQ TMSRSSIPRP TPQMRHAKSF PARPQPR

Best Arabidopsis Sequence Match ( AT5G60710.1 )
(BLAST)

001: MGSKWRKAKV ALGLNLCLYV PKTLEDSSPP RRSDDAVSLS PVIVQRPSTP TPSSSGLRLP RSMSKSSSKK TCAICLTAMK AGQGHAIFTA ECSHSFHFQC
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR

Arabidopsis Description

Retroelement pol polyprotein-like [Source:UniProtKB/TrEMBL;Acc:Q9FF49]
SUBAcon: [mitochondrion,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.