CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU91675	Sorghum	cytosol	69.86	65.59
OQU90497	Sorghum	cytosol	44.35	50.29
OQU79988	Sorghum	cytosol	45.21	48.8
EER95529	Sorghum	nucleus	52.05	46.77
EER91508	Sorghum	cytosol, plastid	51.2	46.21
OQU93258	Sorghum	cytosol	51.2	42.59
OQU85324	Sorghum	mitochondrion	44.01	36.56
OQU93256	Sorghum	mitochondrion	42.98	35.96
Os10t0464800-00	Rice	nucleus	56.51	34.77
EER91513	Sorghum	mitochondrion	41.1	34.09
OQU81931	Sorghum	mitochondrion	40.24	33.72
OQU85917	Sorghum	nucleus	40.24	31.89
EES11757	Sorghum	cytosol	23.46	26.4
KXG25767	Sorghum	mitochondrion	18.66	23.29
EES10354	Sorghum	plastid	18.49	22.69
KXG20893	Sorghum	cytosol, plastid	23.63	22.59
EES05180	Sorghum	mitochondrion	14.21	22.49
KXG38506	Sorghum	cytosol	13.01	22.49
EER87790	Sorghum	endoplasmic reticulum, extracellular	23.8	21.86
OQU89212	Sorghum	cytosol	18.66	19.5
OQU75754	Sorghum	mitochondrion, plastid	19.86	18.74
OQU81040	Sorghum	peroxisome	20.72	16.92

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	EntrezGene:8070508	UniProt:C5WZD9	EnsemblPlants:EER91509
ProteinID:EER91509	ProteinID:EER91509.1	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465
PFAM:PF00092	PFAM:PF14624	PFAM:PF17123	PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579
PANTHER:PTHR10579:SF72	SMART:SM00184	SMART:SM00327	EnsemblPlantsGene:SORBI_3001G227000	SUPFAM:SSF53300	SUPFAM:SSF57850
UniParc:UPI0001A82593	InterPro:VWF_A	InterPro:Vwaint_dom	RefSeq:XP_002464511.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:21731816..21733570

Molecular Weight (calculated)

62385.7 Da

IEP (calculated)

5.793

GRAVY (calculated)

-0.196

Length

584 amino acids

Sequence
(BLAST)

001: MERTAAAVDR CAICLGDILR GQAVFVAECS HSFHHRCISD SVVHGNRDCP LCKATWRDVP AVDPVPPQPP ARKYADDEET VAQGVVQADA DADAAGVAAA
101: DAGDMALKTH CEFPAVARDA SHDNFAVLVH VRAPEAAAAS ADAARAPLDL VTVLDVSGSM QGSKLALLKQ AMGFVIDNLG PADRLSIVSF SNDASREIRL
201: TRMSGDGKAS AKEAVESLVA DGSTNISRGL LVASEVLADR RYRNAVTSVI LLSDGQDNQS GVGRNHQNLV PPLFRDADSR PGSIHTFGFG SDHDAAAMHA
301: IAEVARGTFS FVENLAVIQD SFAQCIGGLL SVVAQNARIA VDCVPPGVRV RQVKSGRYES SVDAEGRAAS VNVGELYAEE ERRFLLFVDV PRAEASEDVT
401: QLVRVRCTYR NVVTGATAAD VVVSGDAVVQ RPVEVSNPEV CMEVERERVR VGAAEEIAAA RAAAERGAFS EAGRILECQR YSLRKLAPGM ARDEMCLALE
501: DELEELVDYM VEEKEYVTKG RARVLERISS HASYGASYGG VPPGAAPRAY RTPAMESMLH KSKKSREKQS SPPPPTKRKH GGSK

Best Arabidopsis Sequence Match ( AT1G08050.1 )
(BLAST)

001: MENPNNLRES KSHLNLNECL TLPKTLDPSS PSPSDASRSS VDPNRPDSSS SRPGSTPSSS GLRFSKGRCA ICLYEIRKED GKAIFTAECS HSFHFDCITS
101: NVKHGNRICP LCRTQWKQVP LCDVDSVPTF VAQRGFEDDE PLPQGDTQIH SDGHRSDHQA LEIKLFPEVS ALAKPVSRAD FAVLVHLKAE GVSDDARRAR
201: APLDLITVLD VSGSMDGVKM ELMKNAMSFV IQNLGETDRL SVISFSSMAR RLFPLRLMSE TGKQAAMQAV NSLVADGGTN IAEGLKIGAR VIEGRRWKNP
301: VSGMMLLSDG QDNFTFSHAG VRLRTDYESL LPSSCRIPIH TFGFGSDHDA ELMHTISEVS SGTFSFIETE TVIQDAFAQC IGGLLSVVIL EQVVEIECIH
401: EQGLKISSIK AGSYRSRIAP DARTATIDVG DMYAEEERDF LVLLEIPCCD NGSGESESLS LLKVRCVYKD PVTKEIVHVE SGELSIQRPM KLTGKEVVSI
501: EVDRQLNRFL VSQAMSEARV LADGGDLSGA VGILRNRERE LSETPSAQSS DRLCQSLSSE LSALQERMTS RRMYRTSGRA YAFSSMSSHS AQRATARGDS
601: TQGFSPVQAY QTSPMARMVT RSQLLVLESP TKPSPGRGEQ S

Arabidopsis Description

T6D22.13 [Source:UniProtKB/TrEMBL;Acc:Q9LN03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.