CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 3
plastid 2
nucleus 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES10354	Sorghum	plastid	48.08	47.27
Os11t0650600-00	Rice	cytosol	25.21	20.74
OQU79988	Sorghum	cytosol	21.58	18.67
EER91509	Sorghum	nucleus	23.29	18.66
OQU90497	Sorghum	cytosol	20.3	18.45
EER87790	Sorghum	endoplasmic reticulum, extracellular	24.36	17.92
Os11t0650500-00	Rice	cytosol	22.01	17.43
OQU75754	Sorghum	mitochondrion, plastid	22.44	16.96
OQU91675	Sorghum	cytosol	22.44	16.88
EER91508	Sorghum	cytosol, plastid	22.86	16.54
EES11757	Sorghum	cytosol	18.16	16.38
EER95529	Sorghum	nucleus	22.01	15.85
OQU93258	Sorghum	cytosol	23.29	15.53
OQU85324	Sorghum	mitochondrion	23.08	15.36
OQU85917	Sorghum	nucleus	24.15	15.33
OQU93256	Sorghum	mitochondrion	22.65	15.19
EER91513	Sorghum	mitochondrion	22.65	15.06
OQU81931	Sorghum	mitochondrion	20.51	13.77
KXG20893	Sorghum	cytosol, plastid	17.31	13.26
EES05180	Sorghum	mitochondrion	10.26	13.01
KXG38506	Sorghum	cytosol	9.19	12.72
OQU89212	Sorghum	cytosol	12.61	10.55
OQU81040	Sorghum	peroxisome	12.39	8.11
GSMUA_Achr4P06340_001	Banana	mitochondrion	0.64	1.56

Protein Annotations

EnsemblPlants:KXG25767	EnsemblPlantsGene:SORBI_3006G005400	Gene3D:3.40.50.410	InterPro:IPR002035	InterPro:IPR036465	InterPro:VWF_A
InterPro:vWFA_dom_sf	PANTHER:PTHR10579	PANTHER:PTHR10579:SF57	PFscan:PS50234	ProteinID:KXG25767	ProteinID:KXG25767.1
SEG:seg	SMART:SM00327	SUPFAM:SSF53300	UniParc:UPI0001C80585	UniProt:A0A1B6PJF9	MapMan:35.2

Description

hypothetical protein

Coordinates

chr6:+:842936..845112

Molecular Weight (calculated)

50478.2 Da

IEP (calculated)

4.899

GRAVY (calculated)

-0.137

Length

468 amino acids

Sequence
(BLAST)

001: MLLCSFLKKE AAAVSMVQLS TFTRVPSIPR DQSYRDFPVT VRVTAAPPDF VQGERTLVDV VAAIDLRWSM GFDDKYGHQP NDRLVRVKEA MAKVIDNLGV
101: DAQNRLAVVG FNQEVATSTE LLEMTAQGQQ SAIETVNALK VLGRPSTFSV GLNEAKKILD GRSLAEKRRS LGFIIFVSNG DDVTFLEKDI PTAYPIHAFG
201: LTAQHSPSKL KAMANQTLGS YTPIENDDLE TKLAEKLDQL SVRLTSVVAV DTTIDLTTLH HGVVVSKLES SWAYNDALVF YKSEIGGGKT SGKVVVGDVS
301: AGELKEFTVY LDVPAAEGQQ DGTGTDDGDS VLELLKVGGV YKQSSDMDKK KVLLGESMVT VVRTDDGGAL DLIEERVAYW CKVKLDLSAM YDKLETEAAG
401: AKSGGDVTEA LALREASVEA INRAMYHDIY NAVLLALKLR RGGDSGNGGS SAMENSPPTP LHPAKTPV

Best Arabidopsis Sequence Match ( AT5G60710.1 )
(BLAST)

001: MGSKWRKAKV ALGLNLCLYV PKTLEDSSPP RRSDDAVSLS PVIVQRPSTP TPSSSGLRLP RSMSKSSSKK TCAICLTAMK AGQGHAIFTA ECSHSFHFQC
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR

Arabidopsis Description

Retroelement pol polyprotein-like [Source:UniProtKB/TrEMBL;Acc:Q9FF49]
SUBAcon: [mitochondrion,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.