CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G084370.1	Barley	cytosol	20.15	75.29
TraesCS2D01G357400.1	Wheat	cytosol, nucleus, peroxisome	63.23	63.62
TraesCS2A01G358400.2	Wheat	cytosol, nucleus, peroxisome	63.85	63.55
TraesCS2B01G377900.1	Wheat	cytosol	62.62	63.0
TraesCS4B01G344200.1	Wheat	cytosol	69.08	62.27
OQU93258	Sorghum	cytosol	67.08	62.11
TraesCS5A01G513100.1	Wheat	cytosol, plastid	46.31	60.93
TraesCS4D01G339300.1	Wheat	cytosol	68.77	59.68
TraesCS5A01G513000.1	Wheat	cytosol	67.23	59.05
HORVU4Hr1G084330.1	Barley	cytosol	66.46	57.14
HORVU0Hr1G005150.3	Barley	cytosol, vacuole	62.31	55.18
EER91508	Sorghum	cytosol, plastid	51.85	52.09
EER91509	Sorghum	nucleus	46.77	52.05
OQU91675	Sorghum	cytosol	47.38	49.52
OQU90497	Sorghum	cytosol	36.92	46.6
OQU79988	Sorghum	cytosol	38.77	46.58
OQU85324	Sorghum	mitochondrion	43.69	40.4
OQU93256	Sorghum	mitochondrion	42.46	39.54
EER91513	Sorghum	mitochondrion	42.0	38.78
OQU81931	Sorghum	mitochondrion	40.62	37.88
HORVU4Hr1G084380.2	Barley	cytosol	32.77	37.83
OQU85917	Sorghum	nucleus	42.15	37.18
EES11757	Sorghum	cytosol	22.0	27.55
EES05180	Sorghum	mitochondrion	13.85	24.39
EES10354	Sorghum	plastid	17.85	24.37
KXG38506	Sorghum	cytosol	12.31	23.67
KXG20893	Sorghum	cytosol, plastid	22.0	23.4
EER87790	Sorghum	endoplasmic reticulum, extracellular	22.15	22.64
KXG25767	Sorghum	mitochondrion	15.85	22.01
OQU89212	Sorghum	cytosol	18.62	21.65
OQU75754	Sorghum	mitochondrion, plastid	20.0	21.0
OQU81040	Sorghum	peroxisome	20.62	18.74

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	EntrezGene:8080584	UniProt:C5WYV1	EnsemblPlants:EER95529
ProteinID:EER95529	ProteinID:EER95529.1	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465
PFAM:PF00092	PFAM:PF14624	PFAM:PF17123	PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579
PANTHER:PTHR10579:SF72	SMART:SM00184	SMART:SM00327	EnsemblPlantsGene:SORBI_3001G508600	SUPFAM:SSF53300	SUPFAM:SSF57850
unigene:Sbi.1927	UniParc:UPI0001A830DD	InterPro:VWF_A	InterPro:Vwaint_dom	RefSeq:XP_002468531.1	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:77659999..77663294

Molecular Weight (calculated)

69337.7 Da

IEP (calculated)

6.363

GRAVY (calculated)

-0.273

Length

650 amino acids

Sequence
(BLAST)

001: MEGTDQSNPC AICLAAMGAA GGQAIFTAEC SHTFHFHCIS ASVAHGNLVC PLCNARWREL PSVVQPQPAP MPRTQPQPLR RPERMHHVQP LPMRHVPLHG
101: WQPQLHPEEP QVFDDDEQVE PPSSGDQAAA SFRSGGTLAV TTHTEYSAVA RDSSRDNFAV LVHIKAPGMT DAEAAAGDAP RAPLDLVTVL DVSGSMIGAK
201: LALLKQAMGF VIDNLGPHDR LSVVSFSDRA RRVTRLLRMS GDGKAAAKSA VESLVARGGT NIAEGLRTAA RVLEERRHRN TVSSVILLSD GQDTYTAPRW
301: SRGPGAGATP NYEALVPPSF MATSTRDWSA PVHTFGFGND HDAAAMHVIA ESTAGTFSYI GNEAVIQDAF AQCIGGLLTV VVQDARVTIA SRHPGVHVGS
401: IKSGRYESRV DEDGRSASVR VGELYADEER RFLLFLTVPA VEATDGETAL IKVSCSYRDT AGGTHVDVTA GDTVVARPEQ VVDAERSAEV ERERVRVEAA
501: EDIAAARAAA ERGAHQEAME ILMSRQQAVV QSGAALGGDA AMQSLGAELQ EMGQLVSNGN SYARSGRAFM LSGMSRHSHQ RASANMVNMG GYMNMAAEAS
601: SSSFATPAMR AMLLRSRKAR EESSVEQQQP SKARKEAESS ALPEPGVVNQ

Best Arabidopsis Sequence Match ( AT1G08050.1 )
(BLAST)

001: MENPNNLRES KSHLNLNECL TLPKTLDPSS PSPSDASRSS VDPNRPDSSS SRPGSTPSSS GLRFSKGRCA ICLYEIRKED GKAIFTAECS HSFHFDCITS
101: NVKHGNRICP LCRTQWKQVP LCDVDSVPTF VAQRGFEDDE PLPQGDTQIH SDGHRSDHQA LEIKLFPEVS ALAKPVSRAD FAVLVHLKAE GVSDDARRAR
201: APLDLITVLD VSGSMDGVKM ELMKNAMSFV IQNLGETDRL SVISFSSMAR RLFPLRLMSE TGKQAAMQAV NSLVADGGTN IAEGLKIGAR VIEGRRWKNP
301: VSGMMLLSDG QDNFTFSHAG VRLRTDYESL LPSSCRIPIH TFGFGSDHDA ELMHTISEVS SGTFSFIETE TVIQDAFAQC IGGLLSVVIL EQVVEIECIH
401: EQGLKISSIK AGSYRSRIAP DARTATIDVG DMYAEEERDF LVLLEIPCCD NGSGESESLS LLKVRCVYKD PVTKEIVHVE SGELSIQRPM KLTGKEVVSI
501: EVDRQLNRFL VSQAMSEARV LADGGDLSGA VGILRNRERE LSETPSAQSS DRLCQSLSSE LSALQERMTS RRMYRTSGRA YAFSSMSSHS AQRATARGDS
601: TQGFSPVQAY QTSPMARMVT RSQLLVLESP TKPSPGRGEQ S

Arabidopsis Description

T6D22.13 [Source:UniProtKB/TrEMBL;Acc:Q9LN03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.